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Cristianetaniguti merged 2 commits into from
May 1, 2026
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Development #15

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Cristianetaniguti May 1, 2026
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Cristianetaniguti May 1, 2026
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15 changes: 3 additions & 12 deletions README.md
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<!-- badges: end -->

# Breedverse <img src="inst/app/www/breedverse_logo.png" align="right" width="250"/>

**Breedverse** is a modular R Shiny application developed by [Breeding Insight](https://www.breedinginsight.org) at University of Florida (UF/IFAS). It serves as a unified hub that lets users install and launch specialized breeding analysis tools — all from a single interface, with no command-line setup required.

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## Overview

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Modules are installed from within the app via the **Install Modules** page. Each module is sourced from GitHub and loaded dynamically. A restart of the app is required after installation to activate the new features.

### Qploidy — Ploidy Estimation

> GitHub: [`Cristianetaniguti/Qploidy`](https://github.com/Cristianetaniguti/Qploidy)

| Feature | Description |
|---|---|
| Standardization | Allele intensities / read counts standardization |
| Ploidy Estimation | Sample-level ploidy inference |
| Aneuploidy Detection | Identify chromosomal copy-number aberrations |

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### BIGapp — Genotype Processing, Population Genomics, GWAS and GS

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