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Update README.md/deltanetsPlus.R #1

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Update README.md
panagiotisc Feb 17, 2021
d3339ef
Update deltanetsPlus.R
panagiotisc Feb 17, 2021
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6 changes: 3 additions & 3 deletions README.md
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Expand Up @@ -11,10 +11,10 @@
Please refer to [DeltaNeTS+ manuscript](https://www.biorxiv.org/content/10.1101/788968v1) for more detailed information.

### DeltaNeTS+ installation
To install `DeltaNeTS+` directly from github repository, `devtools` R package is required.
To install `DeltaNeTS+` directly from github repository, `devtools`, `doSNOW`and `glmnet` R packages are required.

1. Install and load `devtools` package in R.
2. Install the package called `deltanetsPlus`, using `devtools::install_github("CABSEL/DeltaNeTSplus/deltanetsPlus")`. Your package will e inatalled in R library directory.
1. Install and load `devtools`, `doSNOW`and `glmnet` packages in R.
2. Install the package called `deltanetsPlus`, using `devtools::install_github("CABSEL/DeltaNeTSplus/deltanetsPlus")`. Your package will be installed in R library directory.
3. Load the package, using `library(deltanetsPlus)`, and now you're ready to use!


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2 changes: 2 additions & 0 deletions deltanetsPlus/R/deltanetsPlus.R
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Expand Up @@ -222,6 +222,8 @@ deltanetsPlus <- function(data, slope=NULL, grn=NULL, perturbation=c("group","in
cl <- snow::makeCluster(numClusters,outfile='')
# registerDoParallel(cl)
registerDoSNOW(cl)
#export libraries to all workers
clusterCall(cl, function(x) .libPaths(x), .libPaths())

## progress bar in parallel computing
pb <- txtProgressBar(max=length(dgi), style=3)
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