Model builder, latent infection process components and tutorials #650
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…ents, 'aggregate' instead of 'jurisdiction'
…ents, 'aggregate' instead of 'jurisdiction'
for more information, see https://pre-commit.ci
… into mem_generic_observations
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… into mem_generic_observations
Co-authored-by: Dylan H. Morris <dylanhmorris@users.noreply.github.com>
Co-authored-by: Dylan H. Morris <dylanhmorris@users.noreply.github.com>
Co-authored-by: Dylan H. Morris <dylanhmorris@users.noreply.github.com>
Co-authored-by: Dylan H. Morris <dylanhmorris@users.noreply.github.com>
Co-authored-by: Dylan H. Morris <dylanhmorris@users.noreply.github.com>
… into mem_generic_observations
Co-authored-by: Dylan H. Morris <dylanhmorris@users.noreply.github.com>
Co-authored-by: Dylan H. Morris <dylanhmorris@users.noreply.github.com>
Co-authored-by: Dylan H. Morris <dylanhmorris@users.noreply.github.com>
Co-authored-by: Dylan H. Morris <dylanhmorris@users.noreply.github.com>
for more information, see https://pre-commit.ci
… into mem_generic_observations
- Fix typo: "obervation" -> "observation" in building_multisignal_models.qmd - Reorder docstring parameters to match actual signatures in partitioned_infections.py and hierarchical_infections.py - Add missing docstrings to __init__ and validate methods in hierarchical_priors.py - Add Returns sections to _sample_single and _sample_vectorized methods in temporal_processes.py - Add docstrings with Returns sections to test fixtures Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Co-authored-by: Dylan H. Morris <dylanhmorris@users.noreply.github.com>
Co-authored-by: Dylan H. Morris <dylanhmorris@users.noreply.github.com>
… into mem_generic_observations
for more information, see https://pre-commit.ci
… into mem_generic_observations
cdc-mitzimorris
requested review from
SamuelBrand1,
damonbayer and
dylanhmorris
as code owners
cdc-mitzimorris
changed the title
Codecov Report✅ All modified and coverable lines are covered by tests. Additional details and impacted files@@ Coverage Diff @@
## main #650 +/- ##
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+ Coverage 96.98% 98.27% +1.28%
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Files 42 56 +14
Lines 1094 1850 +756
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+ Hits 1061 1818 +757
+ Misses 33 32 -1
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This PR adds the following files to the PyRenew code base, with corresponding unit tests.
pyrenew.latentcomponents that encapsulate a latent infections processpyrenew.modelcomponents that compose and run a multisignal modeltutorials on model building and modeling choices for a latent infections process
The datasets and corresponding data loading utilities used by the tutorial on building multisignal models have been added to the
pyrenew/datasetsdirectory.