increment version to v0.13

build.gradle file updated to change the name of the JAR file that is
built with gradle

main/ScriptManager updated to add a version to the CLI. (Run jar with
`-V` option to view version)

main/ScriptManagerGUI updated to increment the version string used for
the main GUI window title.

Author: owlang

build.gradle

@@ -9,7 +9,7 @@ apply plugin: 'eclipse'
 
 sourceSets.main.java.srcDirs = ['src']
 mainClassName = "main.ScriptManager"
-version = 'v0.12-devCLI'
+version = 'v0.13'
 sourceCompatibility = 1.8
 targetCompatibility = 1.8
 

src/main/ScriptManager.java

@@ -70,6 +70,7 @@
 			Read_AnalysisCLI.class,
 			Sequence_AnalysisCLI.class
 		},
+		version = "ScriptManager-v0.13",
 		mixinStandardHelpOptions = true,
 		description = "Choose a tool directory from below to see more command-line tool options.",
 		exitCodeOnInvalidInput = 1,
@@ -216,4 +217,4 @@ class Read_AnalysisCLI extends SubcommandCLI {}
 			SearchMotifCLI.class
 		},
 		description = "Includes tools like DNAShapefromBEDCLI, DNAShapefromFASTACLI, FASTAExtractCLI, RandomizeFASTACLI, and SearchMotifCLI.")
-class Sequence_AnalysisCLI extends SubcommandCLI {}
+class Sequence_AnalysisCLI extends SubcommandCLI {}

src/main/ScriptManagerGUI.java

@@ -55,7 +55,7 @@
 import window_interface.Figure_Generation.MergeHeatMapWindow;
 
 public class ScriptManagerGUI {
-	public static final String VERSION = "0.12-dev";
+	public static final String VERSION = "0.13";
 
 	private JFrame frmScriptManager;	
 	/**