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Merged
ryan-odea merged 3 commits into from
Dec 10, 2025
Merged

Opt dependency note #28

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663d23d
add a note about optional dependencies for data dumping
ryan-odea Dec 10, 2025
e7d4a32
Update more_advanced_models.md
ryan-odea Dec 10, 2025
0da9a5d
bump minor version
ryan-odea Dec 10, 2025
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9 changes: 9 additions & 0 deletions docs/vignettes/more_advanced_models.md
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Original file line number Diff line number Diff line change
Expand Up @@ -63,12 +63,21 @@ my_analysis.bootstrap()

Now that the underlying bootstrap structure has been in place, we can simply continue as we would in simpler models- fit, survival, plot, collect, and dump.

You can recover all results through the collection, and interact with them as you would normally in Python; however, to dump to md or pdf you may require the optional depedencies which interact with these file formats.

These can be easily installed through the `output` optional dependencies with pySEQTarget.

```shell
pip install pySEQTarget[output]
```

```python
my_analysis.fit()
my_analysis.survival()
my_analysis.plot()

my_output = my_analysis.collect()
# Requires tabulate installation
my_output.to_md()
```

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15 changes: 8 additions & 7 deletions pyproject.toml
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Expand Up @@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"

[project]
name = "pySEQTarget"
version = "0.10.1"
version = "0.10.2"
description = "Sequentially Nested Target Trial Emulation"
readme = "README.md"
license = {text = "MIT"}
Expand Down Expand Up @@ -42,6 +42,13 @@ dependencies = [
"lifelines"
]

[project.optional-dependencies]
output = [
"markdown",
"weasyprint",
"tabulate"
]

[project.urls]
Homepage = "https://github.com/CausalInference/pySEQTarget"
Repository = "https://github.com/CausalInference/pySEQTarget"
Expand All @@ -65,12 +72,6 @@ dev = [
"sphinx-autodoc-typehints",
]

output = [
"markdown",
"weasyprint",
"tabulate"
]

[tool.setuptools.packages.find]
where = ["."]
include = ["pySEQTarget*"]
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