.gitmodules

[submodule "submodules/pinchesAndCacti"]
	path = submodules/pinchesAndCacti
	url = https://github.com/ComparativeGenomicsToolkit/pinchesAndCacti
[submodule "submodules/matchingAndOrdering"]
	path = submodules/matchingAndOrdering
	url = https://github.com/ComparativeGenomicsToolkit/matchingAndOrdering
[submodule "submodules/cPecan"]
	path = submodules/cPecan
	url = https://github.com/ComparativeGenomicsToolkit/cPecan
[submodule "submodules/sonLib"]
	path = submodules/sonLib
	url = https://github.com/ComparativeGenomicsToolkit/sonLib
[submodule "submodules/hal"]
	path = submodules/hal
	url = https://github.com/ComparativeGenomicsToolkit/hal
[submodule "submodules/cactus2hal"]
	path = submodules/cactus2hal
	url = https://github.com/ComparativeGenomicsToolkit/cactus2hal
[submodule "submodules/kyoto"]
	path = submodules/kyoto
	url = https://github.com/ComparativeGenomicsToolkit/kyoto.git
[submodule "submodules/abPOA"]
	path = submodules/abPOA
	url = https://github.com/yangao07/abPOA.git
[submodule "submodules/lastz"]
	path = submodules/lastz
	url = https://github.com/ComparativeGenomicsToolkit/lastz.git
[submodule "submodules/paffy"]
	path = submodules/paffy
	url = https://github.com/ComparativeGenomicsToolkit/paffy.git
[submodule "submodules/red"]
	path = submodules/red
	url = https://github.com/glennhickey/red.git
[submodule "submodules/collapse-bubble"]
	path = submodules/collapse-bubble
	url = https://github.com/Han-Cao/collapse-bubble.git
[submodule "submodules/FASTGA"]
	path = submodules/FASTGA
	url = https://github.com/thegenemyers/FASTGA.git
[submodule "submodules/jemalloc"]
	path = submodules/jemalloc
	url = https://github.com/jemalloc/jemalloc.git
[submodule "submodules/alntools"]
	path = submodules/alntools
	url = https://github.com/richarddurbin/alntools.git
[submodule "submodules/FASTAN"]
	path = submodules/FASTAN
	url = https://github.com/thegenemyers/FASTAN.git