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Pull requests: ComparativeGenomicsToolkit/cactus

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Pull requests list

Update caf to use new paffy Cigar array API
#1905 opened Mar 10, 2026 by benedictpaten Loading…
2 tasks done
Test logic to add augmented reference
#1904 opened Mar 6, 2026 by glennhickey Loading…
Parallelize paffy chain by splitting PAF by query contig
#1891 opened Feb 9, 2026 by benedictpaten Loading…
3 tasks
2
update FASTGA and FASTAN to latest commits
#1876 opened Jan 14, 2026 by glennhickey Loading…
Update BCFtools to use stable sort
#1813 opened Nov 3, 2025 by ASLeonard Loading…
1
add -a to bcftools concat
#1809 opened Oct 30, 2025 by glennhickey Loading…
1
1
add taffy viz toil script (cactus-mafviz)
#1571 opened Dec 20, 2024 by glennhickey Loading…
try to orient bar jobs on reference to left-align downstream
#1248 opened Dec 12, 2023 by glennhickey Loading…
rGFA support (experimental)
#1186 opened Oct 3, 2023 by glennhickey Loading…
WIP: Pangenome Outgroups
#1043 opened Jun 8, 2023 by glennhickey Loading…
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