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@DessimozLab

Dessimoz Lab

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  1. read2tree read2tree Public

    a tool for inferring species tree from sequencing reads

    Python 156 19

  2. fold_tree fold_tree Public

    snakemake pipeline for creating trees from sequence sets

    Jupyter Notebook 95 17

  3. OMArk OMArk Public

    Python 89 7

  4. FastOMA FastOMA Public

    FastOMA is a scalable software package to infer orthology relationship.

    Python 86 17

  5. edgehog edgehog Public

    Infering ancestral synteny with hierarchical orthologous groups

    Python 37 3

  6. phylo-io phylo-io Public

    Phylo.IO JS tree viewer

    JavaScript 35 11

Repositories

Showing 10 of 54 repositories
  • phylo-io Public

    Phylo.IO JS tree viewer

    DessimozLab/phylo-io’s past year of commit activity
    JavaScript 35 MIT 11 5 1 Updated Jan 20, 2026
  • fastoma-bench Public

    Automatic benchmarking of Fastoma over time

    DessimozLab/fastoma-bench’s past year of commit activity
    Python 2 0 0 0 Updated Jan 20, 2026
  • foldtree2 Public

    foldtree2

    DessimozLab/foldtree2’s past year of commit activity
    Jupyter Notebook 6 AGPL-3.0 3 6 0 Updated Jan 16, 2026
  • OMAnnotator Public

    Consensus genome annotation using OMA

    DessimozLab/OMAnnotator’s past year of commit activity
    Python 31 2 4 0 Updated Jan 14, 2026
  • nf-oma-browser-build Public

    Nextflow pipeline to convert OMA to OMA browser

    DessimozLab/nf-oma-browser-build’s past year of commit activity
    Nextflow 2 MIT 0 0 0 Updated Jan 12, 2026
  • ampliphy-analysis Public

    Scripts used to generate the data and figures of AmpliPhy project

    DessimozLab/ampliphy-analysis’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 1, 2026
  • ampliphy Public

    Improve phylogenetic inference by amplifying multiple sequence alignment with homologous sequences

    DessimozLab/ampliphy’s past year of commit activity
    Nextflow 2 MIT 0 0 0 Updated Jan 1, 2026
  • orthoxml-tools Public

    Tools for working with OrthoXML files.

    DessimozLab/orthoxml-tools’s past year of commit activity
    Python 4 GPL-3.0 1 10 0 Updated Dec 30, 2025
  • FastOMA Public

    FastOMA is a scalable software package to infer orthology relationship.

    DessimozLab/FastOMA’s past year of commit activity
    Python 86 MPL-2.0 17 8 0 Updated Dec 29, 2025
  • yeast_fusion_segmenter Public

    retrain yolov8 to segment and label yeast cells with interupted fusion phenotypes

    DessimozLab/yeast_fusion_segmenter’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Dec 10, 2025
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