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fix: workflow linter errors #201

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fix: workflow linter errors #201

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1 change: 1 addition & 0 deletions e02/templates/mib2x-auto.yaml
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Expand Up @@ -8,6 +8,7 @@ metadata:
workflows.argoproj.io/title: ePSIC mib automatic conversion
workflows.argoproj.io/description: |
Convert MIB file to hdf5/hspy files
workflows.diamond.ac.uk/repository: "https://github.com/DiamondLightSource/imaging-workflows"
workflows.diamond.ac.uk/parameter-schema: |
{{- .Files.Get "schema/mib2x_auto_Schema.json" | nindent 6 }}
workflows.diamond.ac.uk/ui-schema: |
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1 change: 1 addition & 0 deletions e02/templates/mib2x.yaml
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Expand Up @@ -8,6 +8,7 @@ metadata:
workflows.argoproj.io/title: ePSIC mib conversion
workflows.argoproj.io/description: |
Convert MIB file to hdf5/hspy files
workflows.diamond.ac.uk/repository: "https://github.com/DiamondLightSource/imaging-workflows"
workflows.diamond.ac.uk/parameter-schema.mib_path: |
{
"type": "string"
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1 change: 1 addition & 0 deletions e02/templates/ptyrex_basic.yaml
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Expand Up @@ -8,6 +8,7 @@ metadata:
workflows.argoproj.io/title: Simple Ptyrex job submission
workflows.argoproj.io/description: |
Submit a Ptyrex job for a particular scan and projection within a given visit
workflows.diamond.ac.uk/repository: "https://github.com/DiamondLightSource/imaging-workflows"
workflows.diamond.ac.uk/parameter-schema: |
{{- .Files.Get "schema/ptyrex_Schema.json" | nindent 6}}
workflows.diamond.ac.uk/ui-schema: |
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2 changes: 2 additions & 0 deletions httomo/templates/cor-sweep.yaml
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Expand Up @@ -2,6 +2,8 @@ apiVersion: argoproj.io/v1alpha1
kind: ClusterWorkflowTemplate
metadata:
name: httomo-cor-sweep
labels:
workflows.diamond.ac.uk/science-group-imaging: "true"
annotations:
workflows.diamond.ac.uk/repository: "https://github.com/DiamondLightSource/imaging-workflows"
workflows.diamond.ac.uk/parameter-schema.input: |
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2 changes: 2 additions & 0 deletions httomo/templates/extract-raw-projections.yaml
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Expand Up @@ -2,6 +2,8 @@ apiVersion: argoproj.io/v1alpha1
kind: ClusterWorkflowTemplate
metadata:
name: extract-raw-projections
labels:
workflows.diamond.ac.uk/science-group-imaging: "true"
annotations:
workflows.diamond.ac.uk/repository: "https://github.com/DiamondLightSource/imaging-workflows"
spec:
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2 changes: 2 additions & 0 deletions httomo/templates/httomo-gpu-template-test.yaml
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Expand Up @@ -2,6 +2,8 @@ apiVersion: argoproj.io/v1alpha1
kind: ClusterWorkflowTemplate
metadata:
name: httomo-gpu-job
labels:
workflows.diamond.ac.uk/science-group-imaging: "true"
annotations:
workflows.diamond.ac.uk/repository: "https://github.com/DiamondLightSource/imaging-workflows"
spec:
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4 changes: 4 additions & 0 deletions i14/templates/align-template.yaml
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Expand Up @@ -2,10 +2,14 @@ apiVersion: argoproj.io/v1alpha1
kind: ClusterWorkflowTemplate
metadata:
name: align
labels:
workflows.diamond.ac.uk/science-group-imaging: "true"

annotations:
workflows.argoproj.io/title: Align data
workflows.argoproj.io/description: |
A utility which takes in a file path, a mask, aligns data according to vertical mass or phase correlation between images, and saves the results.
workflows.diamond.ac.uk/repository: "https://github.com/DiamondLightSource/imaging-workflows"
workflows.diamond.ac.uk/parameter-schema: |
{{- .Files.Get "schema/alignSchema.json" | nindent 6 }}
workflows.diamond.ac.uk/ui-schema: |
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3 changes: 3 additions & 0 deletions i14/templates/mask-template.yaml
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Expand Up @@ -2,10 +2,13 @@ apiVersion: argoproj.io/v1alpha1
kind: ClusterWorkflowTemplate
metadata:
name: mask
labels:
workflows.diamond.ac.uk/science-group-imaging: "true"
annotations:
workflows.argoproj.io/title: Generate a Mask
workflows.argoproj.io/description: |
A utility which takes in a file, such as one with complex or phase information, creates a mask, and saves the results.
workflows.diamond.ac.uk/repository: "https://github.com/DiamondLightSource/imaging-workflows"
workflows.diamond.ac.uk/parameter-schema: |
{{- .Files.Get "schema/maskSchema.json" | nindent 6 }}
workflows.diamond.ac.uk/ui-schema: |
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3 changes: 3 additions & 0 deletions i14/templates/phase-template.yaml
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Expand Up @@ -2,10 +2,13 @@ apiVersion: argoproj.io/v1alpha1
kind: ClusterWorkflowTemplate
metadata:
name: phase
labels:
workflows.diamond.ac.uk/science-group-imaging: "true"
annotations:
workflows.argoproj.io/title: Create phase data
workflows.argoproj.io/description: |
A utility which takes in a complex file, a mask, creates the phase data, and saves the results.
workflows.diamond.ac.uk/repository: "https://github.com/DiamondLightSource/imaging-workflows"
workflows.diamond.ac.uk/parameter-schema: |
{{- .Files.Get "schema/phaseSchema.json" | nindent 6 }}
workflows.diamond.ac.uk/ui-schema: |
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4 changes: 4 additions & 0 deletions i14/templates/tomo-job.yaml
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Expand Up @@ -2,6 +2,10 @@ apiVersion: argoproj.io/v1alpha1
kind: ClusterWorkflowTemplate
metadata:
name: ptycho-tomo-job
labels:
workflows.diamond.ac.uk/science-group-imaging: "true"
annotations:
workflows.diamond.ac.uk/repository: "https://github.com/DiamondLightSource/imaging-workflows"
spec:
entrypoint: ptycho-tomo-run
templates:
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3 changes: 3 additions & 0 deletions nxstacker/templates/nxstacker-template.yaml
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Expand Up @@ -2,10 +2,13 @@ apiVersion: argoproj.io/v1alpha1
kind: ClusterWorkflowTemplate
metadata:
name: nxstacker
labels:
workflows.diamond.ac.uk/science-group-imaging: "true"
annotations:
workflows.argoproj.io/title: nxstacker
workflows.argoproj.io/description: |
nxstacker is an utility to stack projections from different types of experiments to produce NeXus-compliance file(s).
workflows.diamond.ac.uk/repository: "https://github.com/DiamondLightSource/nxstacker"
workflows.diamond.ac.uk/parameter-schema: |
{{- .Files.Get "schema/nxstackerSchema.json" | nindent 6 }}
workflows.diamond.ac.uk/ui-schema: |
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4 changes: 4 additions & 0 deletions ptypy/templates/ptypy-cpu-moonflower-test.yaml
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Expand Up @@ -2,6 +2,10 @@ apiVersion: argoproj.io/v1alpha1
kind: ClusterWorkflowTemplate
metadata:
name: ptypy-cpu-moonflower-benchmark
labels:
workflows.diamond.ac.uk/science-group-imaging: "true"
annotations:
workflows.diamond.ac.uk/repository: "https://github.com/DiamondLightSource/imaging-workflows"
spec:
entrypoint: ptypy-run
volumeClaimTemplates:
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3 changes: 3 additions & 0 deletions ptypy/templates/ptypy-cpu-workflow-template.yaml
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Expand Up @@ -2,10 +2,13 @@ apiVersion: argoproj.io/v1alpha1
kind: ClusterWorkflowTemplate
metadata:
name: ptypy-cpu-job
labels:
workflows.diamond.ac.uk/science-group-imaging: "true"
annotations:
workflows.argoproj.io/title: PtyPy CPU Job Submitter
workflows.argoproj.io/description: |
Runs a PtyPy reconstruction job inside a container.
workflows.diamond.ac.uk/repository: "https://github.com/DiamondLightSource/imaging-workflows"
workflows.diamond.ac.uk/parameter-schema.config: |
{{- .Files.Get "schema/ptypy_moonflower.json" | nindent 6 }}
workflows.diamond.ac.uk/parameter-schema.id: |
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4 changes: 4 additions & 0 deletions ptypy/templates/ptypy-gpu-moonflower-test.yaml
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Expand Up @@ -2,6 +2,10 @@ apiVersion: argoproj.io/v1alpha1
kind: ClusterWorkflowTemplate
metadata:
name: ptypy-gpu-moonflower-benchmark
labels:
workflows.diamond.ac.uk/science-group-imaging: "true"
annotations:
workflows.diamond.ac.uk/repository: "https://github.com/DiamondLightSource/imaging-workflows"
spec:
entrypoint: ptypy-run
volumeClaimTemplates:
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4 changes: 4 additions & 0 deletions ptypy/templates/ptypy-gpu-workflow-template.yaml
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Expand Up @@ -2,6 +2,10 @@ apiVersion: argoproj.io/v1alpha1
kind: ClusterWorkflowTemplate
metadata:
name: ptypy-gpu-job
labels:
workflows.diamond.ac.uk/science-group-imaging: "true"
annotations:
workflows.diamond.ac.uk/repository: "https://github.com/DiamondLightSource/imaging-workflows"
spec:
entrypoint: ptypy-run
volumeClaimTemplates:
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