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Is it possible to have nothing in the sv_inv_h*.bed.gz

Status: Open.

#75 In EichlerLab/pav;

· JoannaTan opened on Feb 13, 2026

call_cigar rule fails silently with no error message (memory issue suspected)

Status: Open.

#74 In EichlerLab/pav;

· epigenomepostdoc opened on Jan 5, 2026

Can't find the <code>runlocal</code> script

Status: Open.

#71 In EichlerLab/pav;

· panosioannidis opened on Sep 17, 2025

Inquiry on Applying PAV for Detecting Complex Structural Variations in Plant Genomes

Status: Open.

#69 In EichlerLab/pav;

· pillar-echo opened on Sep 13, 2025

Understanding alignment trimming in PAV

questionFurther information is requestedFurther information is requested

Status: Open.

#68 In EichlerLab/pav;

· A-J-F-Mackintosh opened on Jul 24, 2025

Clarification of output folders and files

enhancementNew feature or requestNew feature or request

Status: Open.

#67 In EichlerLab/pav;

· OZTaekOppa opened on Apr 28, 2025

apptainer run error

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#59 In EichlerLab/pav;

· jeffchen2000 opened on Sep 21, 2024

Hard coded code block in run directive

enhancementNew feature or requestNew feature or request

Status: Open.

#36 In EichlerLab/pav;

· projectoriented opened on May 30, 2023

Option for calling SV independently

enhancementNew feature or requestNew feature or request

Status: Open.

#26 In EichlerLab/pav;

· VLoegler opened on Dec 13, 2022