fixes in README for LSF submission

README.md

@@ -2,7 +2,7 @@
 --------------------------
 First load the required environment on lxplus:
 ```
-source init.sh
+source ./init.sh
 ```
 Install fastjet (to be done only once):
 ```
@@ -15,7 +15,7 @@ Install fastjet (to be done only once):
 
 First load the required environment on lxplus:
 ```
-source init.sh
+source ./init.sh
 ```
 Compile analysis code (can be found and modified in ```src/analyze.cc```):
 
@@ -35,10 +35,10 @@ e.g:
 []() LSF submission
 --------------------
 
-The script ```batch/submitJetClustering.py``` allows to run this script on LSF queues:
+The script ```batch/submitJetClustering.py``` allows to run this script on LSF queues. You must submit the command from the batch/ directory :
 
 ```
-python batch/submitJetClustering.py -i [NTUP_dir] -n [nevts_per_job] -o [output_dir] --njobs [number_of_jobs] -q [queue]
+python submitJetClustering.py -i [NTUP_dir] -n [nevts_per_job] -o [output_dir] --njobs [number_of_jobs] -q [queue]
 ```
 
 Jobs can be collected via:

plotting/basic_kinematics.py

@@ -0,0 +1,73 @@
+import ROOT, sys, os
+from ROOT import *
+
+#path = "/afs/cern.ch/user/d/djamin/fcc_work/JetClustering/output/20180228_substructure_pt250_5000/"
+path = sys.argv[1]
+
+mass  = ["1000","2000","5000","10000"]
+proc  = ["qcd"  ,"wqq","zqq"   ]
+color = [kBlue-4,kRed ,kGreen-3]
+rec_gen = "reco"
+var     = ["mass"      ,"massSD"       ,"tau21"    ]
+leg_var = ["mass [GeV]","SD mass [GeV]","#tau_{21}"]
+#var     = ["mass","massSD","tau1","tau2","tau3","tau21","tau32"]
+
+for m in mass :
+
+ rebin=4
+ if m=="2000"  : rebin = 5
+ if m=="5000"  : rebin = 10
+ if m=="10000" : rebin = 10
+
+ for v in var :
+  fileName = path+proc[0]+m+".root"
+  f0 = ROOT.TFile(fileName)
+  h0 = f0.Get(rec_gen+"/"+rec_gen+"_"+v)
+  fileName = path+proc[1]+m+".root"
+  f1 = ROOT.TFile(fileName)
+  h1 = f1.Get(rec_gen+"/"+rec_gen+"_"+v)
+  fileName = path+proc[2]+m+".root"
+  f2 = ROOT.TFile(fileName)
+  h2 = f2.Get(rec_gen+"/"+rec_gen+"_"+v)
+
+  c = ROOT.TCanvas("", "", 1000, 1000)
+  ROOT.gROOT.SetBatch(True)
+  ROOT.gStyle.SetOptStat(0)
+
+  h0_int = h0.Integral()
+  h1_int = h1.Integral()
+  h2_int = h2.Integral()
+  h0.Scale(1./h0_int); h0.Rebin(rebin); h0.SetLineWidth(7); h0.SetLineColor(color[0])
+  h1.Scale(1./h1_int); h1.Rebin(rebin); h1.SetLineWidth(7); h1.SetLineColor(color[1])
+  h2.Scale(1./h2_int); h2.Rebin(rebin); h2.SetLineWidth(7); h2.SetLineColor(color[2])
+
+  c.cd(0)
+
+  h0.SetTitle(m+" GeV")
+  h0.GetXaxis().SetTitle(rec_gen+" "+leg_var[var.index(v)])
+  h0.GetYaxis().SetTitle("Normalized to 1.")
+
+  h0.GetXaxis().SetTitleOffset(1.1)
+  h0.GetYaxis().SetTitleOffset(1.5)
+
+  hmax = h0.GetMaximum(); hbinmax = h0.GetMaximumBin()
+  if hmax<h1.GetMaximum() : hmax = h1.GetMaximum(); hbinmax = h1.GetMaximumBin()
+  if hmax<h2.GetMaximum() : hmax = h2.GetMaximum(); hbinmax = h2.GetMaximumBin() 
+  h0.SetMaximum(hmax*1.1)
+
+  h0.Draw("hist")
+  h1.Draw("hist same")
+  h2.Draw("hist same")
+
+  leg_pos="R"
+  if hbinmax>h0.GetNbinsX()*3./5. : leg_pos="L"
+  if leg_pos=="L" : legend=TLegend(0.10,0.70,0.40,0.90)
+  #if leg_pos=="C" : legend=TLegend(0.35,0.70,0.65,0.90)
+  if leg_pos=="R" : legend=TLegend(0.60,0.70,0.90,0.90)
+  legend.AddEntry(h0, proc[0]+" = "+str(h0_int)+" events", "l")
+  legend.AddEntry(h1, proc[1]+" = "+str(h1_int)+" events", "l")
+  legend.AddEntry(h2, proc[2]+" = "+str(h2_int)+" events", "l")
+  legend.Draw()
+
+  c.Print('{}_{}_{}.png'.format(rec_gen,v, m))
+