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SIA Pipeline

sia.project.1.wi.data

Data-wrangling pipeline to build Shiny-ready and OSF-ready datasets for the SiA Wearable Database Shiny App.
The workflow follows best practices from Reproducible Science in Ecology & Evolution — emphasising tidy data, version control, scripted processing, and reproducible environments.


Why this repo?

  • Provides a reproducible data pipeline from raw Excel files to Shiny/OSF-ready datasets.
  • Ensures tidy, relational structures with device_id as the primary key.
  • Guarantees transparency, traceability, and consistency between analyses and published data.

Repository structure

sia.project.1.ws.data/
├─ data/
│  ├─ processed/           
│  ├─ raw/                 
├─ output/                
│  ├─ data/                
│  ├─ plots/               
│  └─ reporting/           
├─ src/
│  ├─ application/         
│  ├─ function/            
│  ├─ reporting/           
├─ temp/
├─ www/               
├─ .gitignore
├─ sia.project.1.wi.data.Rproj
└─ README.md

Inputs (expected in data/raw/)

File Description
devices.xlsx Core device metadata (manufacturer, model, website, release date, market status, main use, etc.)
signals.xlsx Long format: includes sampling_rate_min/max, additional_info, and recording_location
technical_specs.xlsx Device specifications (battery life, connectivity, etc.)
data_access.xlsx Data storage type, raw data access, SDK/API availability
rvu_synthesis.xlsx Validity, reliability, and usability summaries
rvu_synthesis_detailed.xlsx RVU study details
expert_scores.xlsx Expert-based scoring (e.g., short-term, long-term)

Outputs (written to data/output/data/)

File Description
df_wide_sia_wd.rds Dataframe in wide format
df_shiny_sia_wd_filter.rds Dataframe for filters Shiny
df_shiny_sia_wd)info.rds Dataframe for additional char info Shiny
df_osf_sia_wd.rds / df_osf_sia_wd.xlsx Dataframe for OSF
ui_constants.rds Variables for Shiny UI
glos.rds Glossary for Shiny sidebar
df_codebook.rds Codebook for Filter outputs
updates.rds Update section for SHiny homepage

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Data wrangling pipeline to create Shiny and OSF ready dfs

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