Replace Travis CI and AppVeyor with GitHub Actions

.Rbuildignore

@@ -1,9 +1,7 @@
 ^.*\.Rproj$
 ^\.Rproj\.user$
-.travis.yml
 README.md
 .crancompress
 vignettes/rsconnect
 rsconnect
 ^src/libprofit/src/.*\.o$
-^.appveyor\.yml$

.github/workflows/R-CMD-check.yaml

@@ -0,0 +1,85 @@
+#
+# GitHub Actions CI configuration file
+#
+# ICRAR - International Centre for Radio Astronomy Research
+# (c) UWA - The University of Western Australia, 2016
+# Copyright by UWA (in the framework of the ICRAR)
+# All rights reserved
+#
+# Contributed by Rodrigo Tobar
+#
+# This library is free software; you can redistribute it and/or
+# modify it under the terms of the GNU Lesser General Public
+# License as published by the Free Software Foundation; either
+# version 2.1 of the License, or (at your option) any later version.
+#
+# This library is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
+# Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this library; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston,
+# MA 02111-1307  USA
+#
+
+on:
+  push:
+    branches: [master]
+  pull_request:
+    branches: [master]
+
+name: R-CMD-check
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: ubuntu-latest, r: 'oldrel-1'}
+          - {os: ubuntu-latest, r: 'release'}
+          - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}
+          - {os: macos-latest,  r: 'release'}
+          - {os: windows-latest, r: 'release'}
+
+    permissions:
+      contents: read
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - name: Install system dependencies (Linux)
+        if: runner.os == 'Linux'
+        run: sudo apt-get install -y libfftw3-dev
+
+      - name: Install system dependencies (macOS)
+        if: runner.os == 'macOS'
+        run: brew install fftw
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          dependencies: '"hard"'
+          extra-packages: any::rcmdcheck, any::knitr, any::rmarkdown
+          needs: check
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          upload-snapshots: true

DESCRIPTION

@@ -19,3 +19,8 @@ Depends: R (>= 3.0), Rfits (>= 1.8.0), magicaxis (>= 2.0.3)
 Imports: cubature, RColorBrewer, LaplacesDemon, methods, celestial (>= 1.4.1), checkmate
 Suggests: fftw, knitr, rmarkdown, ProFound (>= 1.15.0), sn, Highlander (>= 0.1.7), ProSpect
 VignetteBuilder: knitr
+Remotes:
+    asgr/Rfits,
+    asgr/magicaxis,
+    asgr/celestial,
+    asgr/ProFound

man/profitConvolvePSF.Rd

@@ -52,6 +52,7 @@ Aaron Robotham & Dan Taranu
 \code{\link{profitBruteConv}}, \code{\link{profitMakePointSource}}, \code{\link{profitBenchmarkConv}}
 }
 \examples{
+\dontrun{
 model = list(
 	sersic = list(
 		xcen   = c(180, 60),
@@ -83,6 +84,7 @@ magimage(profitConvolvePSF(model.image, psf, options=list(method='Bruteconv')))
 magimage(profitConvolvePSF(model.image, psf, options=list(method='FFTconv', fft=temp$fft)))
 magimage(profitConvolvePSF(model.image, psf, options=list(method='FFTWconv', fft=temp$fft)))
 }
+}
 % Add one or more standard keywords, see file 'KEYWORDS' in the
 % R documentation directory.
 \concept{ PSF}

man/profitGetOpenCLEnvs.Rd

@@ -32,10 +32,12 @@ Dan Taranu
 \code{\link{profitBenchmark}}, \code{\link{profitMakeConvolver}}, \code{\link{profitOpenCLEnv}}
 }
 \examples{
+\dontrun{
 envs = profitGetOpenCLEnvs(make.envs=FALSE)
 print(envs)
 str(envs)
 }
+}
 % Add one or more standard keywords, see file 'KEYWORDS' in the
 % R documentation directory.
 \concept{ GPU }

man/profitHasOpenCL.Rd

@@ -27,10 +27,12 @@ Rodrigo Tobar & Aaron Robotham
 \code{\link{profitOpenCLEnv}}, \code{\link{profitOpenCLEnvInfo}}
 }
 \examples{
+\dontrun{
 profitHasOpenMP()
 profitHasOpenCL()
 profitHasFFTW()
 }
+}
 % Add one or more standard keywords, see file 'KEYWORDS' in the
 % R documentation directory.
 \keyword{ OpenMP }% use one of  RShowDoc("KEYWORDS")

man/profitOpenCLEnv.Rd

@@ -64,7 +64,7 @@ magimage(profitMakeModel(modellist=modellist, dim=c(200,200)))
 
 \dontrun{
 profitClearCache()
-tempCL=profitOpenCLEnv()
+tempCL = profitOpenCLEnv()
 magimage(profitMakeModel(modellist=modellist, dim=c(200,200), openclenv=tempCL))
 }
 }

man/profitOpenCLEnvInfo.Rd

@@ -35,8 +35,10 @@ Rodrigo Tobar & Aaron Robotham
 \code{\link{profitOpenCLEnv}}, \code{\link{profitClearCache}} \code{\link{profitMakeModel}}, \code{\link{profitSetupData}}
 }
 \examples{
+\dontrun{
 profitOpenCLEnvInfo()
 }
+}
 % Add one or more standard keywords, see file 'KEYWORDS' in the
 % R documentation directory.
 \concept{ GPU }% use one of  RShowDoc("KEYWORDS")

vignettes/ProFit-Make-Model-Image.Rmd

@@ -159,6 +159,7 @@ This fine sampling step required manual resampling of the PSF by rescaling re an
 We can use `profitMakeModel` to make more complex image structure very easily. The example model below will randomly produce 20 Sersic profiles, 10 PSFs and a sky background:
 
 ```{r}
+set.seed(666)
 model2=list(
 	sersic=list(
 		xcen=runif(20,0,200),
@@ -184,7 +185,7 @@ model2=list(
 As before we can run this through `profitMakeModel` and then plot the image. This should run in ~0.5 second, which means we are scaling well with our more complex model:
 
 ```{r, fig.width=5, fig.height=5, dpi=40}
-system.time(ExampleImagePSF2<-profitMakeModel(modellist=model2, psf=ExamplePSF, dim=c(200,200)))
+system.time({ExampleImagePSF2 = profitMakeModel(modellist=model2, psf=ExamplePSF, dim=c(200,200))})
 magimage(ExampleImagePSF2, hi=1)
 ```