Add script to find images#44
Merged
Merged
Conversation
Member
|
Makes sense, and we certainly don't have anything that would do this today (other than listing all and using
|
Member
|
Member
Author
|
Btw, I thought as well, ideally that should be done on the server side. But simply doing some regex matching on the client side for now, is just easier and quicker than going through the whole stack. |
Member
|
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Script to get a list of image IDs which names match a certain regular expression. Based on (just slightly modified): https://github.com/IDR/idr0108-sabinina-nuclearporecomplex/blob/main/scripts/find_images.py) Apart from idr0108 I used it for a few other studies. Often images which need particular rendering settings, pixel sizes, etc. set after import, can be distingushed by a common name pattern. The output can be used to successively call
omero renderetc. in for loop or used withparallel.