bash scripts to compare ChIP-seq samples using tools in Deeptools2.
Deeptools2: https://deeptools.readthedocs.io/en/develop/
Input files: A) Mapped files Bowtie2 (.bam).
https://github.com/IanCodes/compare_replicates/BAM/run_rep_compare_BAM.sh
B) bigWig files from MACS2 (.bw).
https://github.com/IanCodes/compare_replicates/bigWig/run_rep_compare_BW.sh