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"None" string translated to blank in generated runsheets

Status: Open.

#51 In J-81/dp_tools;

· jihanyehia opened on Sep 20, 2025

Handling datasets with no or unmatching "Host organism" when creating runsheets for Amplicon Ilumina pipeline

Status: Open.

#50 In J-81/dp_tools;

· jihanyehia opened on Apr 29, 2025

get_samples() handling numeric sample names

Status: Open.

#49 In J-81/dp_tools;

· cyouh95 opened on Sep 11, 2024

check_sample_in_multiqc_report() handling numeric sample names

Status: Open.

#47 In J-81/dp_tools;

· cyouh95 opened on Aug 15, 2024

ValueError: Length of new names must be 1, got 2

Status: Open.

#41 In J-81/dp_tools;

· asaravia-butler opened on Nov 6, 2023

UnboundLocalError: local variable 'mapped_data' referenced before assignment

Status: Open.

#38 In J-81/dp_tools;

· asaravia-butler opened on Nov 2, 2023

IndexError: list index out of range - error when running extract_datasets.py

Status: Open.

#37 In J-81/dp_tools;

· asaravia-butler opened on Nov 1, 2023

links to download multiqc files seem to be broken

metric_extraction

Status: Open.

#32 In J-81/dp_tools;

· asaravia-butler opened on Oct 30, 2023

download_multiqc_from_OSD.py doesn't accept output directory

Status: Open.

#31 In J-81/dp_tools;

· asaravia-butler opened on Oct 30, 2023

Add --assume-OSDR-urls as option for runsheet generation

Status: Open.

#29 In J-81/dp_tools;

· J-81 opened on May 25, 2023

Check for adaptor content in trimmed fastqc files

Status: Open.

#28 In J-81/dp_tools;

· J-81 opened on Apr 7, 2023

Protocol checks using iteration to load data assets results in check payloads binding last item in iteration

Status: Open.

#27 In J-81/dp_tools;

· J-81 opened on Feb 28, 2023