Bump codecov/codecov-action from 5 to 6

.github/workflows/pipeline.yml

@@ -10,7 +10,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: ["3.9", "3.10", "3.11", "3.12"]
+        python-version: ["3.11", "3.12", "3.13", "3.14"]
     steps:
     - uses: actions/checkout@v6
     - name: Set up Python ${{ matrix.python-version }}
@@ -29,14 +29,14 @@ jobs:
         flake8 . --count --exit-zero --statistics
     - name: Run tests
       run: |
-        pytest --cov=./detl --cov-report xml --cov-report term-missing tests/
+        pytest -v --cov=./detl --cov-report xml --cov-report term-missing tests/
     - name: Upload coverage
-      uses: codecov/codecov-action@v5
+      uses: codecov/codecov-action@v6
       with:
         file: ./coverage.xml
     - name: Test Wheel install and import
       run: |
-        python setup.py bdist_wheel
+        python -m build
         cd dist
         pip install detl*.whl
         python -c "import detl; print(detl.__version__)"

.github/workflows/release.yml

@@ -16,17 +16,17 @@ jobs:
     - name: Set up Python
       uses: actions/setup-python@v6
       with:
-        python-version: 3.9
+        python-version: "3.13"
     - name: Install dependencies
       run: |
         pip install -e .
-        pip install flake8 pytest pytest-cov twine wheel
+        pip install flake8 pytest pytest-cov twine build
     - name: Test with pytest
       run: |
-        pytest --cov=./detl --cov-report xml --cov-report term-missing tests/
+        pytest -v --cov=./detl --cov-report xml --cov-report term-missing tests/
     - name: Build package
       run: |
-        python setup.py sdist bdist_wheel
+        python -m build
     - name: Check version number match
       run: |
         echo "GITHUB_REF: ${GITHUB_REF}"

.pre-commit-config.yaml

@@ -3,19 +3,19 @@
 exclude: testfiles/|\.(csv|ipynb)$
 repos:
 - repo: https://github.com/pre-commit/pre-commit-hooks
-  rev: v4.5.0
+  rev: v6.0.0
   hooks:
     - id: check-merge-conflict
     - id: check-toml
     - id: check-yaml
     - id: end-of-file-fixer
     - id: trailing-whitespace
 - repo: https://github.com/PyCQA/isort
-  rev: 5.12.0
+  rev: 8.0.1
   hooks:
     - id: isort
       name: isort
 - repo: https://github.com/psf/black
-  rev: 23.11.0
+  rev: 26.3.1
   hooks:
     - id: black

detl/__init__.py

@@ -1,7 +1,9 @@
+import importlib.metadata
+
 from . import parsing
 from .core import DASwareParser, DASwareVersion, DWData
 
-__version__ = "1.1.3"
+__version__ = importlib.metadata.version(__package__ or __name__)
 
 parsers = {
     DASwareVersion.V4: parsing.dw4.DASware4Parser,

detl/core.py

@@ -1,4 +1,5 @@
 """Specifies the base types for parsing and representing DASware data."""
+
 import abc
 import enum
 import pathlib

detl/parsing/common.py

@@ -158,6 +158,6 @@ def transform_trackdata(
         if (not new_data.empty) and (not new_data.isnull().all()):
             transformed_data.loc[:, key] = new_data
 
-    transformed_data = transformed_data.fillna(method="ffill")
+    transformed_data = transformed_data.ffill()
 
     return transformed_data

docs/requirements.txt

@@ -2,4 +2,3 @@ sphinx
 sphinx_rtd_theme
 numpydoc
 nbsphinx
-nbsphinx_link

docs/source/conf.py

@@ -37,7 +37,6 @@
     "sphinx_rtd_theme",
     "numpydoc",
     "nbsphinx",
-    "nbsphinx_link",
 ]
 
 # Add any paths that contain templates here, relative to this directory.

docs/source/index.rst

@@ -15,8 +15,8 @@ In the following chapters, we introduce the data structures, basic functions and
    :maxdepth: 2
    :caption: Examples
 
-   01_Basic_Use
-   02_Closest_Point_Lookup
+   notebooks/01_Basic_Use
+   notebooks/02_Closest_Point_Lookup
 
 
 You can find auto-generated API documentation below:

notebooks/README.md

@@ -0,0 +1,5 @@
+# Notebooks Moved
+
+Visit [docs/source/notebooks](../docs/source/notebooks).
+
+Or visit https://detl.readthedocs.io.

pyproject.toml

@@ -1,5 +1,54 @@
+[build-system]
+requires = ["setuptools>=61.0"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "detl"
+version = "1.2.0"
+description = "Package for parsing and transforming DASware raw data exports."
+readme = "README.md"
+requires-python = ">=3.11"
+license = "AGPL-3.0-or-later"
+authors = [
+    {name = "Michael Osthege", email = "m.osthege@fz-juelich.de"},
+    {name = "Niklas Tenhaef", email = "n.tenhaef@fz-juelich.de"},
+    {name = "Valentin Steier", email = "v.steier@fz-juelich.de"},
+]
+classifiers = [
+    "Programming Language :: Python",
+    "Operating System :: OS Independent",
+    "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
+    "Programming Language :: Python :: 3.14",
+    "Intended Audience :: Science/Research",
+    "Topic :: Scientific/Engineering",
+]
+dependencies = [
+    "numpy",
+    "pandas",
+    "pytz",
+]
+
+[project.urls]
+Homepage = "https://github.com/jubiotech/detl"
+Documentation = "https://detl.readthedocs.io/en/latest/"
+Download = "https://pypi.org/project/detl/"
+
+[tool.setuptools]
+package-dir = {"detl" = "detl"}
+
+[tool.setuptools.package-data]
+"detl" = ["py.typed"]
+
 [tool.black]
 line-length = 100
 
 [tool.isort]
 profile = "black"
+
+[tool.mypy]
+ignore_missing_imports = true
+exclude = [
+    'test_.*?\.py$',
+]

requirements-dev.txt

@@ -1,6 +1,7 @@
+build
 flake8
+pandas>=3.0.0
 pytest
 pytest-cov
 twine
-wheel
 watermark

tests/test_detl.py

@@ -1,4 +1,5 @@
 """Contains unit tests for the `detl` package"""
+
 import datetime
 import pathlib
 import unittest