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@mducducd mducducd commented Jan 12, 2026

  • Add new h_optimus1+ticon extractor. In the mean time, this TICON checkpoint achived best benchmark with H-Optimus-1 as the tile encoder whether it's from individual or omni pretraining; a separate feature-level TICON stage can be considered later as more state-of-the-art foundation extractors become available. Also they will public tangle model for slide-level later.
  • Fix: TITAN operates on patch grid geometry, not microns, so patch spacing must be inferred from coordinate stride rather than assumed from physical size.
  • Fix: Correcting StratifiedKFold by event/status (survival analysis)

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@mducducd mducducd changed the title add feature extractor TICON add feature extractor TICON and bug fixes Jan 28, 2026
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FWao commented Jan 28, 2026

@mducducd Please add tests.

We should also do some end-to-end tests to validate TICON works.

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mducducd commented Jan 28, 2026

feature_extractor test takes all extractors in ExtractorName collection.

class ExtractorName(StrEnum):

I rerun extractor test and all 17 extractors was tested including Ticon (h_optimus_1 integrated). I am not sure the run checks showed on github, virchow family are also missing.

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