Various updates for new release - collapse function, auto axis, code modularisation#9
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Various updates for new release - collapse function, auto axis, code modularisation#9
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Added several new features and debugged existing features.
collapsefunction, which will collapse clades where all leaf names contain a specific stringAdded the
auto_axfunction, which now runs as default and adjusts the axis limits to best display the phylogeny. This option can be turned off for manual control of the position of the tree on the axis.Modularised the code into the
draw_tree,amend_treeandget_boxesmodule filesVarious minor updates to tests and documentation,.