Installation

To use these,

1. clone the repository at, say, ~/.software/cluster-utils/; and
2. depending on the scheduler available, add one of the following to your ~/.bash_profile.

PBS

_job_script_name="job.pbs"
_cluster_utils_location="$HOME/.software/cluster-utils"
. "$_cluster_utils_location"/bash/pbs/monitoring.sh
. "$_cluster_utils_location"/bash/pbs/submission.sh
. "$_cluster_utils_location"/bash/submission_common.sh

SLURM

_job_script_name="job.sh"
_cluster_utils_location="$HOME/.software/cluster-utils"
. "$_cluster_utils_location"/bash/slurm/monitoring.sh
. "$_cluster_utils_location"/bash/slurm/submission.sh
. "$_cluster_utils_location"/bash/submission_common.sh

Commands

Cluster/job status

• ja: show all jobs
• jaq: show all queued jobs
• jar: show all running jobs
• myq: show current user's jobs
• myj: more detailed display of current user's jobs

Job handling

Generic

• jdel $job_id: cancels a job
• jint: requests an interactive job
• jhold $job_id: hold a queued job
• jrls $job_id: release a held job
• sub $job_dir_1 $job_dir_2: submit jobs, one job for each given directory
• subh $job_dir_1 $job_dir_2: submit jobs in a held state

Pencil-code-specific

• pc_stop $job_id_1 $job_id_2
• pc_reload $job_id_1 $job_id_2
• pc_sub $job_id_1 $job_id_2
• pc_subh $job_id_1 $job_id_2