The quarantine hospital strategy as a way to reduce both community and nosocomial transmission in the context of a COVID-like epidemic

Théo Pinettes $^{1}$, Quentin J Leclerc $^{1,2,3,4}$, Kévin Jean $^{1,2,5}$, Laura Temime $^{1,2}$*

$^{1}$ MESuRS laboratory, Conservatoire national des Arts et Métiers, Paris, France
$^{2}$ PACRI unit, Institut Pasteur, Conservatoire national des arts et métiers, Paris, France
$^{3}$ Institut Pasteur, Université Paris Cité, Epidemiology and Modelling of Bacterial Escape to Antimicrobials (EMEA), Paris, France
$^{4}$ INSERM, Université Paris-Saclay, Université de Versailles St-Quentin-en-Yvelines, Team Echappement aux Anti-infectieux et Pharmacoépidémiologie U1018, CESP, Versailles, France
$^{5}$ Eco-Evolutionary Mathematics team, IBENS, Ecole Normale Supérieure, CNRS, INSERM, Université Paris Science & Lettres, Paris, France

* laura.temime@lecnam.net

Analysis folder

Contains the script for the model (model.R) as well as the script used to generate all the main results (run_model.R), which are then saved in the "Results" folder.

The other scripts are used to process the results and generate figures and tables. The name of the script indicates which figure(s) it generates.

Results folder

Contains the main model results as an .rds object.

Figures folder

Contains figures produced by analysis scripts.