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fix variable referenced before assignment when using no_filtering_by_…#239

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tomhend:fix_ref_before_assign
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fix variable referenced before assignment when using no_filtering_by_…#239
tomhend wants to merge 2 commits into
MIC-DKFZ:masterfrom
tomhend:fix_ref_before_assign

add removal of tmp_dir and return to end function on masks

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