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| ```Python | ||
| amino_acid_tools('DNA', 'russco', 'LOLkEk', 'azaz', 'three_letter_code') | ||
| ``` | ||
| Output: ['AspAsnAla', 'ArgSecSerSerCysPyl', 'LeuPylLeuLysGluLys', 'unexpected symbols in sequence'] | ||
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| ```Python | ||
| amino_acid_tools('DNA', 'russco', 'LOLkEk', 'azaz', 'letter_code') |
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)))0)0
Хотя всё-таки в "официальной документации" так делать не надо ))
| """ | ||
| n = 0 | ||
| for nucl in seq: | ||
| if nucl == 'c' or nucl == 'g' or nucl == 'C' or nucl == 'G': |
| Returns: | ||
| (str): oligo- and polynucleotide sequence | ||
| """ | ||
| return complement(seq)[::-1] |
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| import modules.nucleic_acids_functions as na | ||
| import modules.fastq_filters as ff | ||
| import modules.amino_acids_functions as aa |
| import modules.nucleic_acids_functions as na | ||
| import modules.fastq_filters as ff | ||
| import modules.amino_acids_functions as aa | ||
| NUCLEOTIDES = {'U', 'A', 'g', 't', 'G', 'T', 'a', 'c', 'C', 'u'} |
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| good_seqs = ff.filter_length(ff.filter_quality(ff.filter_gc(seqs, gc_bounds_both_side), quality_treshold), | ||
| length_bounds_both_side) |
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Классно, но, имхо, через переменные красивее ))
filtered_by_gc = filter_gc(seqs, ...)
filtered_by_quality = filter_quality(filtered_by_gc, ...)
filtered_by_len = filter_length(filtered_by_quality, ...)Прост фильтров же может быть еще 10 ))
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