GEOPY-2741: Continue update to Python 3.12

[domfournier]

GEOPY-2741 - Continue update to Python 3.12

[Copilot]

Pull request overview

This PR updates the project’s supported Python/runtime baseline and refreshes dependency pins/lockfiles to match newer versions across conda/Poetry and CI.

Changes:

• Raise minimum supported Python to 3.12 and update CI/deploy workflows accordingly.
• Bump core dependencies (e.g., geoh5py/geoapps-utils, numpy, scipy, scikit-image, dash) and update ruff target version.
• Regenerate conda lockfiles for supported Python versions and remove Python 3.10 lockfiles.

Reviewed changes

Copilot reviewed 32 out of 36 changed files in this pull request and generated 5 comments.

Show a summary per file

File	Description
recipe.yaml	Updates conda package requirements for newer Python/dependency baseline.
pyproject.toml	Updates Python compatibility, Poetry deps, lint target version, and mypy plugin list.
deps-lock-config.yaml	Adjusts which Python versions get dependency lock generation.
.pre-commit-config.yaml	Updates mypy hook dependency pins to match new baseline.
.idea/curve-apps.iml	Alters tracked IDE module configuration for the repo.
.github/workflows/python_deploy_dev.yml	Updates deploy workflow Python version to 3.12.
.github/workflows/python_analysis.yml	Updates analysis/test matrix Python versions and codecov reference.
environments/env-python-3.13.yml	Updates conda env spec to Python 3.13.
environments/env-python-3.14.yml	Updates conda env spec to Python 3.14.
environments/py-3.13-win-64.conda.lock.yml	Regenerated conda-lock for py3.13 on Windows.
environments/py-3.13-win-64-raw.conda.lock.yml	Regenerated raw conda-lock for py3.13 on Windows.
environments/py-3.13-linux-64.conda.lock.yml	Regenerated conda-lock for py3.13 on Linux.
environments/py-3.13-linux-64-raw.conda.lock.yml	Regenerated raw conda-lock for py3.13 on Linux.
environments/py-3.12-win-64.conda.lock.yml	Regenerated conda-lock for py3.12 on Windows.
environments/py-3.12-win-64-raw.conda.lock.yml	Regenerated raw conda-lock for py3.12 on Windows.
environments/py-3.12-win-64-dev-raw.conda.lock.yml	Regenerated dev raw conda-lock for py3.12 on Windows.
environments/py-3.12-linux-64.conda.lock.yml	Regenerated conda-lock for py3.12 on Linux.
environments/py-3.12-linux-64-raw.conda.lock.yml	Regenerated raw conda-lock for py3.12 on Linux.
environments/py-3.12-linux-64-dev-raw.conda.lock.yml	Regenerated dev raw conda-lock for py3.12 on Linux.
environments/py-3.10-*.conda.lock.yml	Removed Python 3.10 lockfiles as part of dropping support.

Files not reviewed (1)

• .idea/curve-apps.iml: Language not supported

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[codecov]

Codecov Report

❌ Patch coverage is 28.57143% with 5 lines in your changes missing coverage. Please review.
✅ Project coverage is 67.89%. Comparing base (d4120d1) to head (737508e).

Files with missing lines	Patch %	Lines
curve_apps/peak_finder/line_group.py	16.66%	5 Missing ⚠️

Additional details and impacted files

@@             Coverage Diff             @@
##           develop     #102      +/-   ##
===========================================
- Coverage    67.95%   67.89%   -0.06%     
===========================================
  Files           20       20              
  Lines         2356     2358       +2     
  Branches       323      324       +1     
===========================================
  Hits          1601     1601              
- Misses         653      654       +1     
- Partials       102      103       +1     

Files with missing lines	Coverage Δ
curve_apps/contours/options.py	96.61% <100.00%> (ø)
curve_apps/peak_finder/line_group.py	66.87% <16.66%> (-0.21%)	⬇️

... and 1 file with indirect coverage changes

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