DEVOPS-989: use reusable pr_jira_actions workflow

[andrewg-mira]

DEVOPS-989 - Migrate repositories to use Jira actions github workflow

• match the disabled skipping behaviour of to_params in the validate_data to avoid key error.
• repr is just the path (or title if path isn't set) and str is the json formatted string
• pylint fix
• create the workspace
• Docstring typing upgrade
• add to_params call to test_disabled_forms and check disabled form values are omitted
• Add flatten method and hook up to_params. Tests passing
• decided not to use flatten in the print, adjusted the formatting a bit and allowing str with conversion on read(path) for convenience.
• Dynamically create a StrEnum from the DataTypeEnum in geoh5py.Data
• User DataAssociationEnum in dynamic strEnum
• first pass
• Add multi choice data form, split data form into plain and data or value form types to reduce complexity
• Add a data group form (used for gradient rotation in simpeg-drivers ui.json)
• Fix infinite recursion bug when BaseUIJson.read() takes a file with a parameter named 'groups'.
• MultiChoiceDataForm->MultiSelectDataForm
• add place_holder_text
• Access class attribute model_fields
• Bump pydantic
• Bring back geoh5 promotion
• Augment unit test
• first draft.
• functions are working and cleanup.
• I had to remove the auto-creation of a 2dgrid for tif, because it's obviously create errors for large image!
• fiiiixed!
• added Dom's comments
• small changes for tests to pass
• fix name so that camel to snake conversion is handled properly by pydantic
• update docstring too
• Bump urllib3 from 2.5.0 to 2.6.0
• add an extra test file for errors in cut_by_extent (mechanics tested under geoimage)
• First pass
• annotations and validations in the right homes
• more Ben,s comments
• las tchanges. correcting the tests
• poetry update
• Add DataRangeForm to the infer
• small refactor while looking into fixtures for Matthieu. We can call a fixture from within a fixture, so I replaced the old mechanic of passing tmp_path into a function that creates data with a fixture (tmp_path) in a fixture (sample_uijson).
• Updated docstrings/typing across forms/uijson
• Remove code associated with aborted uijson/forms design and subclasses of BaseValidationError intended to be used by InputFile, but currently not being used.
• Add curly braces to uid serializers
• fix test
• fisrt round.
• augment the guardrails
• Matthieu's comments
• clean out tests
• added the tests
• fix the visual parameter bug
• modifications from Ben's comments
• update annotation and log inferred types
• remove print
• happy new year!
• always set the transparency if not present
• change the function to define the plane from 2 points
• dom's comment:
• [pre-commit.ci] auto fixes from pre-commit.com hooks
• linter fix
• Fix up copyright years
• update based on dom's comment:
• last copyrights to change
• Make u,v_cell_size kwargs
• first pass
• Replaced infer with logic stored in forms under abc enforced type_check method.
• linter fix
• Use generic type var to remove type_check assert after all_subclasses
• Update geoh5py/ui_json/forms.py
• remove double if statements in favour of 'and' logic and remove return check in favor of double return statements.
• New infer without type_check and indicator_keys
• cleanup
• linter
• linter
• simplification
• dedicated form_utils
• only compute all_subclasses and indicator_attributes once
• Add utility method on curve object
• cleanup
• Fix error message
• Flip colors in and out, update test
• Fix docs. Add image
• Open/close workspace between exmaples
• Dom's comments
• remove typevar
• Further simplification
• Add comment
• Add docs about child/parent relationship
• Use TypeAdaptor for type checking
• update str to show form types for easier validation of infer method
• code quality fix
• Fix typo. Expand on parent re-assignment
• Minor clean ups
• More typos
• Fix typo and improve layout
• Use dictionary to map GA names to geoh5py class names
• case and whitespace insensitivity
• Refactor FileForm -> FileForm, MultiFileForm, DirectoryForm.
• Start adding Maxwell plate with geometry from viz params
• Dom's comments
• Fix serialization of parameters
• fix for ubuntu pytest runs
• Use ContextVar to pass the parent to child model. Being adding tests
• Update geoh5py/ui_json/forms.py
• Pass the parent during validation instead of ContextVar
• Finish implementation. Change set_tag on visualparameters to handle dict of values.
• Add classes
• More docstrings
• Beef up unit test
• Use deep copy instead of copy
• Remove class attributes
• Add unit test
• update the GA_STRING_TO_GROUP/OBJECT mappers.
• Add return type
• Implement kwargs instead
• Remove type ignore
• Fix test
• Mute pylint
• update all _default_name class attributes and generate map for pydantic validation
• replace TYPE_UID_TO_CLASS definition with call to map_to_class
• Update geoh5py/objects/surveys/electromagnetics/base.py
• Update geoh5py/objects/surveys/electromagnetics/base.py
• Update geoh5py/shared/utils.py
• Update geoh5py/shared/validators.py
• Update geoh5py/shared/validators.py
• finish GA_STRING -> GA_NAME rename
• add PyCharm iml for scope definition to work
• Decrease the odds
• Bump versions
• Bump gitactions
• Update tests
• Remove randomness in length
• Re-lock numpy on 2.4.2
• Update recipe
• Attempt fix for linux
• Line up recipe
• DEVOPS-977 zizmor: allow unpinned action from MiraGeoscience repos
• [GEOPY-2661] simplify dependency version expression
• [GEOPY-2661] no need of h5py in dev deps, as already a main one
• [GEOPY-2661] use python_min variable instead of hard-coded python version
• add Dom as a recipe maintainer
• [GEOPY-2661] remove reference to obsolete numpy plugin for mypy
• [GEOPY-2661] modernize code for Python 3.12
• [GEOPY-2661] stronger typehints
• fix swapped zizmor job names
• change the typing of depth_table_by_name
• DEVOPS-989 use reusable pr_jira_actions workflow

[codecov]

Codecov Report

❌ Patch coverage is 93.40659% with 60 lines in your changes missing coverage. Please review.
✅ Project coverage is 91.18%. Comparing base (111470c) to head (da71cd2).
⚠️ Report is 1 commits behind head on main.

Files with missing lines	Patch %	Lines
geoh5py/shared/cut_by_extent.py	92.10%	6 Missing and 6 partials ⚠️
geoh5py/ui_json/validations/form.py	59.25%	10 Missing and 1 partial ⚠️
...jects/surveys/electromagnetics/airborne_app_con.py	89.88%	5 Missing and 4 partials ⚠️
geoh5py/objects/geo_image.py	95.75%	4 Missing and 3 partials ⚠️
geoh5py/objects/maxwell_plate.py	93.02%	1 Missing and 5 partials ⚠️
geoh5py/shared/utils.py	92.20%	3 Missing and 3 partials ⚠️
geoh5py/ui_json/forms.py	97.10%	2 Missing and 2 partials ⚠️
geoh5py/objects/object_base.py	66.66%	1 Missing and 1 partial ⚠️
geoh5py/ui_json/ui_json.py	96.61%	1 Missing and 1 partial ⚠️
geoh5py/shared/validators.py	94.11%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #854      +/-   ##
==========================================
+ Coverage   90.91%   91.18%   +0.27%     
==========================================
  Files         113      115       +2     
  Lines        9869    10272     +403     
  Branches     1836     1898      +62     
==========================================
+ Hits         8972     9367     +395     
+ Misses        485      483       -2     
- Partials      412      422      +10     

Files with missing lines	Coverage Δ
geoh5py/data/referenced_data.py	83.13% <100.00%> (+0.63%)	⬆️
geoh5py/data/visual_parameters.py	86.84% <100.00%> (+3.50%)	⬆️
geoh5py/groups/__init__.py	100.00% <100.00%> (ø)
geoh5py/groups/container.py	100.00% <100.00%> (ø)
geoh5py/groups/drillhole.py	100.00% <100.00%> (ø)
geoh5py/groups/integrator.py	100.00% <100.00%> (ø)
geoh5py/groups/interpretation_section.py	100.00% <100.00%> (ø)
geoh5py/groups/survey.py	100.00% <100.00%> (ø)
geoh5py/objects/__init__.py	100.00% <100.00%> (ø)
geoh5py/objects/block_model.py	98.41% <100.00%> (+0.02%)	⬆️
... and 39 more

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