GEOPY-2741: Continue update to Python 3.12

[domfournier]

GEOPY-2741 - Continue update to Python 3.12

[Copilot]

Pull request overview

This PR upgrades the minimum Python version from 3.10 to 3.12 and bumps major dependencies (numpy from 1.26 to 2.4, geoh5py from 0.12 to 0.13, Pillow from 10.3 to 12.1) across all configuration files. The requires-python upper bound is also tightened from <4.0 to <3.15.

Changes:

• Bumped minimum Python version to 3.12 across pyproject.toml, recipe.yaml, CI workflows, and tooling config (ruff target, pre-commit).
• Upgraded numpy to 2.4., geoh5py to 0.13., and related transitive dependencies (Pillow, h5py, pydantic); removed backport packages no longer needed for Python <3.11 (tomli, exceptiongroup).
• Uncommented the numpy mypy dependency in .pre-commit-config.yaml and cleaned up the mypy plugins section.

Reviewed changes

Copilot reviewed 5 out of 6 changed files in this pull request and generated no comments.

Show a summary per file

File	Description
recipe.yaml	Updated python_min to 3.12, bumped numpy and geoh5py version constraints
pyproject.toml	Updated requires-python, numpy dep, ruff target version, cleaned up mypy plugins
poetry.lock	Regenerated lock file reflecting all dependency upgrades and removed backport packages
.pre-commit-config.yaml	Uncommented numpy dependency for mypy hook, updated to 2.4.*
.github/workflows/python_deploy_dev.yml	Updated Python version to 3.12 for deploy jobs
.github/workflows/python_analysis.yml	Updated Python versions to 3.12 base and test matrix to 3.12–3.14

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[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 92.83%. Comparing base (a42a200) to head (2b75776).

Additional details and impacted files

@@           Coverage Diff            @@
##           develop     #119   +/-   ##
========================================
  Coverage    92.82%   92.83%           
========================================
  Files           27       27           
  Lines         1506     1507    +1     
========================================
+ Hits          1398     1399    +1     
  Misses         108      108           

Files with missing lines	Coverage Δ
tests/conftest.py	100.00% <ø> (ø)
tests/convert_grid2d_test.py	100.00% <100.00%> (ø)
tests/convert_volume_test.py	100.00% <100.00%> (ø)

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[RichardScottOZ]

@domfournier if I want to use this currently - which branch / python / geoh5py do you recommend please?

[domfournier]

@domfournier if I want to use this currently - which branch / python / geoh5py do you recommend please?

Morning Richard,

Looks like you caught us during migration. See answer on your issue: #120 (comment)