GEOPY-2029: Update Simpeg 0.21.2 to 0.23 - and mkl 2024

.github/workflows/python_analysis.yml

@@ -18,7 +18,7 @@ on:
       - hotfix/**
 
 concurrency:
-  group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
+  group: ${{ github.workflow }}-${{ github.repository_id }}-${{ github.head_ref || github.run_id }}
   cancel-in-progress: true
 
 jobs:
@@ -31,11 +31,11 @@ jobs:
       python-version: '3.10'
   call-workflow-pytest:
     name: Pytest
-    uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest.yml@main
+    uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest.yml@GEOPY-2029
     with:
       package-manager: 'conda'
-      python-versions: '["3.10", "3.11"]'
-      os: '["ubuntu-latest", "windows-latest"]'
+      python-versions: '["3.10", "3.11", "3.12"]'
+      os: '["ubuntu-latest", "windows-2019", "windows-2025"]'
       cache-number: 1
       codecov-reference-python-version: '3.10'
       codecov-reference-os: '["windows-latest"]'

deps-lock-config.yaml

@@ -2,3 +2,4 @@ include_dev: True
 py_versions:
   - "3.10"
   - "3.11"
+  - "3.12"

environments/env-python-3.12.yml

@@ -0,0 +1,3 @@
+dependencies:
+  - python=3.12.*
+  - pip

environments/py-3.10-linux-64-dev.conda.lock.yml

@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: f39d0e50145913995309b3351ecd85215cdd2608ef353f901b8bf849e92e4104
+# input_hash: 1ce214c3e53d3cff5034336fc0e1d0ca6c8d6f263e67b25ed623f1df00e365a0
 
 channels:
   - conda-forge
@@ -53,15 +53,14 @@ dependencies:
   - discretize=0.11.2=py310ha2bacc8_1
   - distributed=2024.6.2=pyhd8ed1ab_0
   - docutils=0.19=py310hff52083_1
-  - empymod=2.2.2=pyhd8ed1ab_0
   - exceptiongroup=1.2.2=pyhd8ed1ab_1
   - executing=2.1.0=pyhd8ed1ab_1
   - fasteners=0.19=pyhd8ed1ab_1
   - fonttools=4.56.0=py310h89163eb_0
   - fqdn=1.5.1=pyhd8ed1ab_1
   - freetype=2.12.1=h267a509_2
-  - fsspec=2022.11.0=pyhd8ed1ab_0
-  - geoana=0.5.0=py310hcb52e73_4
+  - fsspec=2025.2.0=pyhd8ed1ab_0
+  - geoana=0.7.2=py310ha2bacc8_0
   - greenlet=3.1.1=py310hf71b8c6_1
   - h11=0.14.0=pyhd8ed1ab_1
   - h2=4.2.0=pyhd8ed1ab_0
@@ -83,7 +82,7 @@ dependencies:
   - ipython_genutils=0.2.0=pyhd8ed1ab_2
   - ipywidgets=7.8.5=pyhd8ed1ab_0
   - isoduration=20.11.0=pyhd8ed1ab_1
-  - isort=6.0.0=pyhd8ed1ab_0
+  - isort=6.0.1=pyhd8ed1ab_0
   - jedi=0.19.2=pyhd8ed1ab_1
   - jinja2=3.1.5=pyhd8ed1ab_0
   - joblib=1.4.2=pyhd8ed1ab_1
@@ -113,11 +112,11 @@ dependencies:
   - ld_impl_linux-64=2.43=h712a8e2_4
   - lerc=4.0.0=h27087fc_0
   - libaec=1.1.3=h59595ed_0
-  - libblas=3.9.0=20_linux64_mkl
+  - libblas=3.9.0=31_hfdb39a5_mkl
   - libbrotlicommon=1.1.0=hb9d3cd8_2
   - libbrotlidec=1.1.0=hb9d3cd8_2
   - libbrotlienc=1.1.0=hb9d3cd8_2
-  - libcblas=3.9.0=20_linux64_mkl
+  - libcblas=3.9.0=31_h372d94f_mkl
   - libcurl=8.12.1=h332b0f4_0
   - libdeflate=1.23=h4ddbbb0_0
   - libdlf=0.3.0=pyhd8ed1ab_1
@@ -128,11 +127,10 @@ dependencies:
   - libgcc-ng=14.2.0=h69a702a_2
   - libgfortran=14.2.0=h69a702a_2
   - libgfortran5=14.2.0=hf1ad2bd_2
-  - libhwloc=2.11.1=default_hecaa2ac_1000
+  - libhwloc=2.11.2=default_h0d58e46_1001
   - libiconv=1.18=h4ce23a2_1
   - libjpeg-turbo=3.0.0=hd590300_1
-  - liblapack=3.9.0=20_linux64_mkl
-  - libllvm15=15.0.7=ha7bfdaf_5
+  - liblapack=3.9.0=31_hc41d3b0_mkl
   - liblzma=5.6.4=hb9d3cd8_0
   - libnghttp2=1.64.0=h161d5f1_0
   - libnsl=2.0.1=hd590300_0
@@ -152,7 +150,6 @@ dependencies:
   - libzlib=1.3.1=hb9d3cd8_2
   - linkify-it-py=2.0.3=pyhd8ed1ab_1
   - llvm-openmp=19.1.7=h024ca30_0
-  - llvmlite=0.44.0=py310h1a6248f_0
   - locket=1.0.0=pyhd8ed1ab_0
   - markdown-it-py=2.2.0=pyhd8ed1ab_0
   - markupsafe=3.0.2=py310h89163eb_1
@@ -163,7 +160,7 @@ dependencies:
   - mdurl=0.1.2=pyhd8ed1ab_1
   - metis=5.1.0=hd0bcaf9_1007
   - mistune=3.1.2=pyhd8ed1ab_0
-  - mkl=2023.2.0=h84fe81f_50496
+  - mkl=2024.2.2=ha957f24_16
   - msgpack-python=1.1.0=py310h3788b33_0
   - mumps-include=5.7.3=ha770c72_7
   - mumps-seq=5.7.3=h2064c95_7
@@ -179,7 +176,6 @@ dependencies:
   - nest-asyncio=1.6.0=pyhd8ed1ab_1
   - notebook=7.3.2=pyhd8ed1ab_0
   - notebook-shim=0.2.4=pyhd8ed1ab_1
-  - numba=0.61.0=py310h699fe88_1
   - numcodecs=0.13.1=py310h5eaa309_0
   - numpy=1.26.4=py310hb13e2d6_0
   - openjpeg=2.5.3=h5fbd93e_0
@@ -200,7 +196,7 @@ dependencies:
   - pluggy=1.5.0=pyhd8ed1ab_1
   - prometheus_client=0.21.1=pyhd8ed1ab_0
   - prompt-toolkit=3.0.50=pyha770c72_0
-  - psutil=6.1.1=py310ha75aee5_0
+  - psutil=7.0.0=py310ha75aee5_0
   - pthread-stubs=0.4=hb9d3cd8_1002
   - ptyprocess=0.7.0=pyhd8ed1ab_1
   - pure_eval=0.2.3=pyhd8ed1ab_1
@@ -210,7 +206,7 @@ dependencies:
   - pydantic=2.10.6=pyh3cfb1c2_0
   - pydantic-core=2.27.2=py310h505e2c1_0
   - pydata-sphinx-theme=0.15.4=pyhd8ed1ab_0
-  - pydiso=0.1.2=py310h7b68af5_0
+  - pydiso=0.1.2=py310h69a6472_0
   - pygments=2.19.1=pyhd8ed1ab_0
   - pylint=3.3.4=pyh29332c3_0
   - pymatsolver=0.3.1=pyh48887ae_201
@@ -223,7 +219,7 @@ dependencies:
   - python-fastjsonschema=2.21.1=pyhd8ed1ab_0
   - python-json-logger=2.0.7=pyhd8ed1ab_0
   - python-mumps=0.0.3=py310h6410a28_0
-  - python-tzdata=2023.4=pyhd8ed1ab_0
+  - python-tzdata=2025.1=pyhd8ed1ab_0
   - python_abi=3.10=5_cp310
   - pytz=2024.1=pyhd8ed1ab_0
   - pyyaml=6.0.2=py310h89163eb_2
@@ -238,7 +234,7 @@ dependencies:
   - scikit-learn=1.4.2=py310h981052a_1
   - scipy=1.14.1=py310hfcf56fc_2
   - send2trash=1.8.3=pyh0d859eb_1
-  - setuptools=75.8.0=pyhff2d567_0
+  - setuptools=75.8.2=pyhff2d567_0
   - six=1.17.0=pyhd8ed1ab_0
   - sniffio=1.3.1=pyhd8ed1ab_1
   - snowballstemmer=2.2.0=pyhd8ed1ab_0
@@ -264,7 +260,7 @@ dependencies:
   - sqlalchemy=2.0.38=py310ha75aee5_0
   - stack_data=0.6.3=pyhd8ed1ab_1
   - tabulate=0.9.0=pyhd8ed1ab_2
-  - tbb=2021.12.0=h84d6215_4
+  - tbb=2021.13.0=hceb3a55_1
   - tblib=3.0.0=pyhd8ed1ab_1
   - terminado=0.18.1=pyh0d859eb_0
   - threadpoolctl=3.5.0=pyhc1e730c_0
@@ -303,9 +299,9 @@ dependencies:
   - zstandard=0.19.0=py310h5764c6d_0
   - zstd=1.5.7=hb8e6e7a_1
   - pip:
-      - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@4d829b7b8759d7537a8184aa506548ddccf72041
+      - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@6ba24321d5311bbaf7ab460261ce6730ed541131
       - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@99300455d1d5627d8a2e95a7217da2bab4921f48
-      - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@42d85343d46e85faa8fd1f7ac8608a49fe1b4ced
+      - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@275985aa18af76d70d55311e45dcfed149e62089
       - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@3c479f5d098332ff1c6e0eca0d56be6cc01e0911
       - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@39de1da1495aff6d16641d408317619e23adbdb4
 

environments/py-3.10-linux-64.conda.lock.yml

@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: f39d0e50145913995309b3351ecd85215cdd2608ef353f901b8bf849e92e4104
+# input_hash: 1ce214c3e53d3cff5034336fc0e1d0ca6c8d6f263e67b25ed623f1df00e365a0
 
 channels:
   - conda-forge
@@ -30,12 +30,11 @@ dependencies:
   - dask-core=2024.6.2=pyhd8ed1ab_0
   - discretize=0.11.2=py310ha2bacc8_1
   - distributed=2024.6.2=pyhd8ed1ab_0
-  - empymod=2.2.2=pyhd8ed1ab_0
   - fasteners=0.19=pyhd8ed1ab_1
   - fonttools=4.56.0=py310h89163eb_0
   - freetype=2.12.1=h267a509_2
-  - fsspec=2022.11.0=pyhd8ed1ab_0
-  - geoana=0.5.0=py310hcb52e73_4
+  - fsspec=2025.2.0=pyhd8ed1ab_0
+  - geoana=0.7.2=py310ha2bacc8_0
   - h2=4.2.0=pyhd8ed1ab_0
   - h5py=3.13.0=nompi_py310h60e0fe6_100
   - hdf5=1.14.3=nompi_h2d575fe_109
@@ -53,11 +52,11 @@ dependencies:
   - ld_impl_linux-64=2.43=h712a8e2_4
   - lerc=4.0.0=h27087fc_0
   - libaec=1.1.3=h59595ed_0
-  - libblas=3.9.0=20_linux64_mkl
+  - libblas=3.9.0=31_hfdb39a5_mkl
   - libbrotlicommon=1.1.0=hb9d3cd8_2
   - libbrotlidec=1.1.0=hb9d3cd8_2
   - libbrotlienc=1.1.0=hb9d3cd8_2
-  - libcblas=3.9.0=20_linux64_mkl
+  - libcblas=3.9.0=31_h372d94f_mkl
   - libcurl=8.12.1=h332b0f4_0
   - libdeflate=1.23=h4ddbbb0_0
   - libdlf=0.3.0=pyhd8ed1ab_1
@@ -68,11 +67,10 @@ dependencies:
   - libgcc-ng=14.2.0=h69a702a_2
   - libgfortran=14.2.0=h69a702a_2
   - libgfortran5=14.2.0=hf1ad2bd_2
-  - libhwloc=2.11.1=default_hecaa2ac_1000
+  - libhwloc=2.11.2=default_h0d58e46_1001
   - libiconv=1.18=h4ce23a2_1
   - libjpeg-turbo=3.0.0=hd590300_1
-  - liblapack=3.9.0=20_linux64_mkl
-  - libllvm15=15.0.7=ha7bfdaf_5
+  - liblapack=3.9.0=31_hc41d3b0_mkl
   - liblzma=5.6.4=hb9d3cd8_0
   - libnghttp2=1.64.0=h161d5f1_0
   - libnsl=2.0.1=hd590300_0
@@ -90,18 +88,16 @@ dependencies:
   - libxml2=2.13.6=h8d12d68_0
   - libzlib=1.3.1=hb9d3cd8_2
   - llvm-openmp=19.1.7=h024ca30_0
-  - llvmlite=0.44.0=py310h1a6248f_0
   - locket=1.0.0=pyhd8ed1ab_0
   - markupsafe=3.0.2=py310h89163eb_1
   - matplotlib-base=3.8.4=py310hef631a5_2
   - metis=5.1.0=hd0bcaf9_1007
-  - mkl=2023.2.0=h84fe81f_50496
+  - mkl=2024.2.2=ha957f24_16
   - msgpack-python=1.1.0=py310h3788b33_0
   - mumps-include=5.7.3=ha770c72_7
   - mumps-seq=5.7.3=h2064c95_7
   - munkres=1.1.4=pyh9f0ad1d_0
   - ncurses=6.5=h2d0b736_3
-  - numba=0.61.0=py310h699fe88_1
   - numcodecs=0.13.1=py310h5eaa309_0
   - numpy=1.26.4=py310hb13e2d6_0
   - openjpeg=2.5.3=h5fbd93e_0
@@ -111,29 +107,29 @@ dependencies:
   - partd=1.4.2=pyhd8ed1ab_0
   - pillow=10.3.0=py310hebfe307_1
   - pip=25.0.1=pyh8b19718_0
-  - psutil=6.1.1=py310ha75aee5_0
+  - psutil=7.0.0=py310ha75aee5_0
   - pthread-stubs=0.4=hb9d3cd8_1002
   - pycparser=2.22=pyh29332c3_1
   - pydantic=2.10.6=pyh3cfb1c2_0
   - pydantic-core=2.27.2=py310h505e2c1_0
-  - pydiso=0.1.2=py310h7b68af5_0
+  - pydiso=0.1.2=py310h69a6472_0
   - pymatsolver=0.3.1=pyh48887ae_201
   - pyparsing=3.2.1=pyhd8ed1ab_0
   - pysocks=1.7.1=pyha55dd90_7
   - python=3.10.16=he725a3c_1_cpython
   - python-dateutil=2.9.0.post0=pyhff2d567_1
   - python-mumps=0.0.3=py310h6410a28_0
-  - python-tzdata=2023.4=pyhd8ed1ab_0
+  - python-tzdata=2025.1=pyhd8ed1ab_0
   - python_abi=3.10=5_cp310
   - pytz=2024.1=pyhd8ed1ab_0
   - pyyaml=6.0.2=py310h89163eb_2
   - readline=8.2=h8c095d6_2
   - scikit-learn=1.4.2=py310h981052a_1
   - scipy=1.14.1=py310hfcf56fc_2
-  - setuptools=75.8.0=pyhff2d567_0
+  - setuptools=75.8.2=pyhff2d567_0
   - six=1.17.0=pyhd8ed1ab_0
   - sortedcontainers=2.4.0=pyhd8ed1ab_1
-  - tbb=2021.12.0=h84d6215_4
+  - tbb=2021.13.0=hceb3a55_1
   - tblib=3.0.0=pyhd8ed1ab_1
   - threadpoolctl=3.5.0=pyhc1e730c_0
   - tk=8.6.13=noxft_h4845f30_101
@@ -156,9 +152,9 @@ dependencies:
   - zstandard=0.19.0=py310h5764c6d_0
   - zstd=1.5.7=hb8e6e7a_1
   - pip:
-      - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@4d829b7b8759d7537a8184aa506548ddccf72041
+      - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@6ba24321d5311bbaf7ab460261ce6730ed541131
       - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@99300455d1d5627d8a2e95a7217da2bab4921f48
-      - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@42d85343d46e85faa8fd1f7ac8608a49fe1b4ced
+      - mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@275985aa18af76d70d55311e45dcfed149e62089
       - octree-creation-app @ git+https://github.com/MiraGeoscience/octree-creation-app.git@3c479f5d098332ff1c6e0eca0d56be6cc01e0911
       - param-sweeps @ git+https://github.com/MiraGeoscience/param-sweeps.git@39de1da1495aff6d16641d408317619e23adbdb4