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GEOPY-2440: add a copy group+object base in inputfile as it exists uin uijhson group #275

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Merged
domfournier merged 4 commits into from
Sep 17, 2025
Merged

GEOPY-2440: add a copy group+object base in inputfile as it exists uin uijhson group #275

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c1125ef
Fix reference to IFile stringify and demote
domfournier Sep 17, 2025
ba8085b
Allow setting the out_group. Fix mechanics for joint
domfournier Sep 17, 2025
aa06f12
Re-lock with latest
domfournier Sep 17, 2025
5f096cf
Fix batch
domfournier Sep 17, 2025
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22 changes: 11 additions & 11 deletions environments/py-3.10-linux-64-dev.conda.lock.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -57,7 +57,7 @@ dependencies:
- fasteners=0.19=pyhd8ed1ab_1
- fonttools=4.59.2=py310h3406613_0
- fqdn=1.5.1=pyhd8ed1ab_1
- freetype=2.14.0=ha770c72_1
- freetype=2.14.1=ha770c72_0
- fsspec=2025.9.0=pyhd8ed1ab_0
- geoana=0.7.2=py310ha2bacc8_0
- greenlet=3.2.4=py310hea6c23e_1
Expand Down Expand Up @@ -123,8 +123,8 @@ dependencies:
- libev=4.33=hd590300_2
- libexpat=2.7.1=hecca717_0
- libffi=3.4.6=h2dba641_1
- libfreetype=2.14.0=ha770c72_1
- libfreetype6=2.14.0=h73754d4_1
- libfreetype=2.14.1=ha770c72_0
- libfreetype6=2.14.1=h73754d4_0
- libgcc=15.1.0=h767d61c_5
- libgcc-ng=15.1.0=h69a702a_5
- libgfortran=15.1.0=h69a702a_5
Expand All @@ -149,8 +149,8 @@ dependencies:
- libwebp-base=1.6.0=hd42ef1d_0
- libxcb=1.17.0=h8a09558_0
- libxcrypt=4.4.36=hd590300_1
- libxml2=2.14.6=h26afc86_1
- libxml2-16=2.14.6=ha9997c6_1
- libxml2=2.15.0=h26afc86_0
- libxml2-16=2.15.0=ha9997c6_0
- libzlib=1.3.1=hb9d3cd8_2
- linkify-it-py=2.0.3=pyhd8ed1ab_1
- llvm-openmp=21.1.0=h4922eb0_0
Expand Down Expand Up @@ -183,7 +183,7 @@ dependencies:
- numcodecs=0.13.1=py310h5eaa309_0
- numpy=1.26.4=py310hb13e2d6_0
- openjpeg=2.5.3=h55fea9a_1
- openssl=3.5.2=h26f9b46_0
- openssl=3.5.3=h26f9b46_0
- overrides=7.7.0=pyhd8ed1ab_1
- packaging=25.0=pyh29332c3_1
- pandas=2.3.2=py310h0158d43_0
Expand All @@ -206,14 +206,14 @@ dependencies:
- pybtex=0.25.1=pyhd8ed1ab_0
- pybtex-docutils=1.0.3=py310hff52083_2
- pycparser=2.22=pyh29332c3_1
- pydantic=2.11.7=pyh3cfb1c2_0
- pydantic=2.11.9=pyh3cfb1c2_0
- pydantic-core=2.33.2=py310hbcd0ec0_0
- pydata-sphinx-theme=0.15.4=pyhd8ed1ab_0
- pydiso=0.1.2=py310h69a6472_0
- pygments=2.19.2=pyhd8ed1ab_0
- pylint=3.3.8=pyhe01879c_0
- pymatsolver=0.3.1=pyh48887ae_201
- pyparsing=3.2.3=pyhe01879c_2
- pyparsing=3.2.4=pyhcf101f3_0
- pysocks=1.7.1=pyha55dd90_7
- pytest=8.4.2=pyhd8ed1ab_0
- pytest-cov=7.0.0=pyhcf101f3_1
Expand Down Expand Up @@ -302,11 +302,11 @@ dependencies:
- zeromq=4.3.5=h387f397_9
- zict=3.0.0=pyhd8ed1ab_1
- zipp=3.23.0=pyhd8ed1ab_0
- zstandard=0.24.0=py310h1d967bf_1
- zstandard=0.25.0=py310h139afa4_0
- zstd=1.5.7=hb8e6e7a_2
- pip:
- geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@a6627f0a6e663e9c3f0e9874f401a34ab8990488
- geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@a05ed0984fc78d2b324c730ccd4294c0fde0f901
- geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@a91e9479d6e948728ad430e0db526c75013c9773
- geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@496248c06ecbc113df0f0b76e1afc4610c469bf5
- grid-apps @ git+https://github.com/MiraGeoscience/grid-apps.git@416815352706add295a9d2b90814d2291068a85e
- mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@7da0cb45b4ff1213d1cca120773971aa8468a5c1

Expand Down
22 changes: 11 additions & 11 deletions environments/py-3.10-linux-64.conda.lock.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -33,7 +33,7 @@ dependencies:
- distributed=2025.3.0=pyhd8ed1ab_0
- fasteners=0.19=pyhd8ed1ab_1
- fonttools=4.59.2=py310h3406613_0
- freetype=2.14.0=ha770c72_1
- freetype=2.14.1=ha770c72_0
- fsspec=2025.9.0=pyhd8ed1ab_0
- geoana=0.7.2=py310ha2bacc8_0
- h2=4.3.0=pyhcf101f3_0
Expand Down Expand Up @@ -65,8 +65,8 @@ dependencies:
- libev=4.33=hd590300_2
- libexpat=2.7.1=hecca717_0
- libffi=3.4.6=h2dba641_1
- libfreetype=2.14.0=ha770c72_1
- libfreetype6=2.14.0=h73754d4_1
- libfreetype=2.14.1=ha770c72_0
- libfreetype6=2.14.1=h73754d4_0
- libgcc=15.1.0=h767d61c_5
- libgcc-ng=15.1.0=h69a702a_5
- libgfortran=15.1.0=h69a702a_5
Expand All @@ -90,8 +90,8 @@ dependencies:
- libwebp-base=1.6.0=hd42ef1d_0
- libxcb=1.17.0=h8a09558_0
- libxcrypt=4.4.36=hd590300_1
- libxml2=2.14.6=h26afc86_1
- libxml2-16=2.14.6=ha9997c6_1
- libxml2=2.15.0=h26afc86_0
- libxml2-16=2.15.0=ha9997c6_0
- libzlib=1.3.1=hb9d3cd8_2
- llvm-openmp=21.1.0=h4922eb0_0
- locket=1.0.0=pyhd8ed1ab_0
Expand All @@ -108,7 +108,7 @@ dependencies:
- numcodecs=0.13.1=py310h5eaa309_0
- numpy=1.26.4=py310hb13e2d6_0
- openjpeg=2.5.3=h55fea9a_1
- openssl=3.5.2=h26f9b46_0
- openssl=3.5.3=h26f9b46_0
- packaging=25.0=pyh29332c3_1
- pandas=2.3.2=py310h0158d43_0
- partd=1.4.2=pyhd8ed1ab_0
Expand All @@ -118,12 +118,12 @@ dependencies:
- psutil=7.0.0=py310h7c4b9e2_1
- pthread-stubs=0.4=hb9d3cd8_1002
- pycparser=2.22=pyh29332c3_1
- pydantic=2.11.7=pyh3cfb1c2_0
- pydantic=2.11.9=pyh3cfb1c2_0
- pydantic-core=2.33.2=py310hbcd0ec0_0
- pydiso=0.1.2=py310h69a6472_0
- pylint=3.3.8=pyhe01879c_0
- pymatsolver=0.3.1=pyh48887ae_201
- pyparsing=3.2.3=pyhe01879c_2
- pyparsing=3.2.4=pyhcf101f3_0
- pysocks=1.7.1=pyha55dd90_7
- python=3.10.18=hd6af730_0_cpython
- python-dateutil=2.9.0.post0=pyhe01879c_2
Expand Down Expand Up @@ -163,11 +163,11 @@ dependencies:
- zarr=2.14.2=pyhd8ed1ab_0
- zict=3.0.0=pyhd8ed1ab_1
- zipp=3.23.0=pyhd8ed1ab_0
- zstandard=0.24.0=py310h1d967bf_1
- zstandard=0.25.0=py310h139afa4_0
- zstd=1.5.7=hb8e6e7a_2
- pip:
- geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@a6627f0a6e663e9c3f0e9874f401a34ab8990488
- geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@a05ed0984fc78d2b324c730ccd4294c0fde0f901
- geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@a91e9479d6e948728ad430e0db526c75013c9773
- geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@496248c06ecbc113df0f0b76e1afc4610c469bf5
- grid-apps @ git+https://github.com/MiraGeoscience/grid-apps.git@416815352706add295a9d2b90814d2291068a85e
- mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@7da0cb45b4ff1213d1cca120773971aa8468a5c1

Expand Down
23 changes: 12 additions & 11 deletions environments/py-3.10-win-64-dev.conda.lock.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -57,7 +57,7 @@ dependencies:
- fasteners=0.19=pyhd8ed1ab_1
- fonttools=4.59.2=py310hdb0e946_0
- fqdn=1.5.1=pyhd8ed1ab_1
- freetype=2.14.0=h57928b3_1
- freetype=2.14.1=h57928b3_0
- fsspec=2025.9.0=pyhd8ed1ab_0
- geoana=0.7.2=py310h3e8ed56_0
- greenlet=3.2.4=py310h73ae2b4_1
Expand All @@ -69,6 +69,7 @@ dependencies:
- httpcore=1.0.9=pyh29332c3_0
- httpx=0.28.1=pyhd8ed1ab_0
- hyperframe=6.1.0=pyhd8ed1ab_0
- icu=75.1=he0c23c2_0
- idna=3.10=pyhd8ed1ab_1
- imagesize=1.4.1=pyhd8ed1ab_0
- importlib-metadata=8.7.0=pyhe01879c_1
Expand Down Expand Up @@ -118,8 +119,8 @@ dependencies:
- libdlf=0.3.0=pyhd8ed1ab_1
- libexpat=2.7.1=hac47afa_0
- libffi=3.4.6=h537db12_1
- libfreetype=2.14.0=h57928b3_1
- libfreetype6=2.14.0=hdbac1cb_1
- libfreetype=2.14.1=h57928b3_0
- libfreetype6=2.14.1=hdbac1cb_0
- libgcc=15.1.0=h1383e82_5
- libgomp=15.1.0=h1383e82_5
- libhwloc=2.12.1=default_h64bd3f2_1002
Expand All @@ -136,8 +137,8 @@ dependencies:
- libwebp-base=1.6.0=h4d5522a_0
- libwinpthread=12.0.0.r4.gg4f2fc60ca=h57928b3_9
- libxcb=1.17.0=h0e4246c_0
- libxml2=2.14.6=h5d26750_1
- libxml2-16=2.14.6=h692994f_1
- libxml2=2.15.0=ha29bfb0_0
- libxml2-16=2.15.0=h06f855e_0
- libzlib=1.3.1=h2466b09_2
- linkify-it-py=2.0.3=pyhd8ed1ab_1
- llvm-openmp=20.1.8=hfa2b4ca_2
Expand Down Expand Up @@ -167,7 +168,7 @@ dependencies:
- numcodecs=0.13.1=py310hb4db72f_0
- numpy=1.26.4=py310hf667824_0
- openjpeg=2.5.3=h24db6dd_1
- openssl=3.5.2=h725018a_0
- openssl=3.5.3=h725018a_0
- overrides=7.7.0=pyhd8ed1ab_1
- packaging=25.0=pyh29332c3_1
- pandas=2.3.2=py310hed136d8_0
Expand All @@ -188,14 +189,14 @@ dependencies:
- pybtex=0.25.1=pyhd8ed1ab_0
- pybtex-docutils=1.0.3=py310h5588dad_2
- pycparser=2.22=pyh29332c3_1
- pydantic=2.11.7=pyh3cfb1c2_0
- pydantic=2.11.9=pyh3cfb1c2_0
- pydantic-core=2.33.2=py310hed05c55_0
- pydata-sphinx-theme=0.15.4=pyhd8ed1ab_0
- pydiso=0.1.2=py310h8f92c26_0
- pygments=2.19.2=pyhd8ed1ab_0
- pylint=3.3.8=pyhe01879c_0
- pymatsolver=0.3.1=pyh48887ae_201
- pyparsing=3.2.3=pyhe01879c_2
- pyparsing=3.2.4=pyhcf101f3_0
- pysocks=1.7.1=pyh09c184e_7
- pytest=8.4.2=pyhd8ed1ab_0
- pytest-cov=7.0.0=pyhcf101f3_1
Expand Down Expand Up @@ -291,11 +292,11 @@ dependencies:
- zeromq=4.3.5=h5bddc39_9
- zict=3.0.0=pyhd8ed1ab_1
- zipp=3.23.0=pyhd8ed1ab_0
- zstandard=0.24.0=py310he058f06_1
- zstandard=0.25.0=py310h1637853_0
- zstd=1.5.7=hbeecb71_2
- pip:
- geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@a6627f0a6e663e9c3f0e9874f401a34ab8990488
- geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@a05ed0984fc78d2b324c730ccd4294c0fde0f901
- geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@a91e9479d6e948728ad430e0db526c75013c9773
- geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@496248c06ecbc113df0f0b76e1afc4610c469bf5
- grid-apps @ git+https://github.com/MiraGeoscience/grid-apps.git@416815352706add295a9d2b90814d2291068a85e
- mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@7da0cb45b4ff1213d1cca120773971aa8468a5c1

Expand Down
23 changes: 12 additions & 11 deletions environments/py-3.10-win-64.conda.lock.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -32,14 +32,15 @@ dependencies:
- distributed=2025.3.0=pyhd8ed1ab_0
- fasteners=0.19=pyhd8ed1ab_1
- fonttools=4.59.2=py310hdb0e946_0
- freetype=2.14.0=h57928b3_1
- freetype=2.14.1=h57928b3_0
- fsspec=2025.9.0=pyhd8ed1ab_0
- geoana=0.7.2=py310h3e8ed56_0
- h2=4.3.0=pyhcf101f3_0
- h5py=3.14.0=nompi_py310hb7e4da9_101
- hdf5=1.14.6=nompi_he30205f_103
- hpack=4.1.0=pyhd8ed1ab_0
- hyperframe=6.1.0=pyhd8ed1ab_0
- icu=75.1=he0c23c2_0
- importlib-metadata=8.7.0=pyhe01879c_1
- isort=6.0.1=pyhd8ed1ab_1
- jinja2=3.1.6=pyhd8ed1ab_0
Expand All @@ -59,8 +60,8 @@ dependencies:
- libdlf=0.3.0=pyhd8ed1ab_1
- libexpat=2.7.1=hac47afa_0
- libffi=3.4.6=h537db12_1
- libfreetype=2.14.0=h57928b3_1
- libfreetype6=2.14.0=hdbac1cb_1
- libfreetype=2.14.1=h57928b3_0
- libfreetype6=2.14.1=hdbac1cb_0
- libgcc=15.1.0=h1383e82_5
- libgomp=15.1.0=h1383e82_5
- libhwloc=2.12.1=default_h64bd3f2_1002
Expand All @@ -76,8 +77,8 @@ dependencies:
- libwebp-base=1.6.0=h4d5522a_0
- libwinpthread=12.0.0.r4.gg4f2fc60ca=h57928b3_9
- libxcb=1.17.0=h0e4246c_0
- libxml2=2.14.6=h5d26750_1
- libxml2-16=2.14.6=h692994f_1
- libxml2=2.15.0=ha29bfb0_0
- libxml2-16=2.15.0=h06f855e_0
- libzlib=1.3.1=h2466b09_2
- llvm-openmp=20.1.8=hfa2b4ca_2
- locket=1.0.0=pyhd8ed1ab_0
Expand All @@ -91,7 +92,7 @@ dependencies:
- numcodecs=0.13.1=py310hb4db72f_0
- numpy=1.26.4=py310hf667824_0
- openjpeg=2.5.3=h24db6dd_1
- openssl=3.5.2=h725018a_0
- openssl=3.5.3=h725018a_0
- packaging=25.0=pyh29332c3_1
- pandas=2.3.2=py310hed136d8_0
- partd=1.4.2=pyhd8ed1ab_0
Expand All @@ -101,12 +102,12 @@ dependencies:
- psutil=7.0.0=py310h29418f3_1
- pthread-stubs=0.4=h0e40799_1002
- pycparser=2.22=pyh29332c3_1
- pydantic=2.11.7=pyh3cfb1c2_0
- pydantic=2.11.9=pyh3cfb1c2_0
- pydantic-core=2.33.2=py310hed05c55_0
- pydiso=0.1.2=py310h8f92c26_0
- pylint=3.3.8=pyhe01879c_0
- pymatsolver=0.3.1=pyh48887ae_201
- pyparsing=3.2.3=pyhe01879c_2
- pyparsing=3.2.4=pyhcf101f3_0
- pysocks=1.7.1=pyh09c184e_7
- python=3.10.18=h8c5b53a_0_cpython
- python-dateutil=2.9.0.post0=pyhe01879c_2
Expand Down Expand Up @@ -150,11 +151,11 @@ dependencies:
- zarr=2.14.2=pyhd8ed1ab_0
- zict=3.0.0=pyhd8ed1ab_1
- zipp=3.23.0=pyhd8ed1ab_0
- zstandard=0.24.0=py310he058f06_1
- zstandard=0.25.0=py310h1637853_0
- zstd=1.5.7=hbeecb71_2
- pip:
- geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@a6627f0a6e663e9c3f0e9874f401a34ab8990488
- geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@a05ed0984fc78d2b324c730ccd4294c0fde0f901
- geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@a91e9479d6e948728ad430e0db526c75013c9773
- geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@496248c06ecbc113df0f0b76e1afc4610c469bf5
- grid-apps @ git+https://github.com/MiraGeoscience/grid-apps.git@416815352706add295a9d2b90814d2291068a85e
- mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@7da0cb45b4ff1213d1cca120773971aa8468a5c1

Expand Down
22 changes: 11 additions & 11 deletions environments/py-3.11-linux-64-dev.conda.lock.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -58,7 +58,7 @@ dependencies:
- fasteners=0.19=pyhd8ed1ab_1
- fonttools=4.59.2=py311h3778330_0
- fqdn=1.5.1=pyhd8ed1ab_1
- freetype=2.14.0=ha770c72_1
- freetype=2.14.1=ha770c72_0
- fsspec=2025.9.0=pyhd8ed1ab_0
- geoana=0.7.2=py311h5b7b71f_0
- greenlet=3.2.4=py311h1ddb823_1
Expand Down Expand Up @@ -125,8 +125,8 @@ dependencies:
- libev=4.33=hd590300_2
- libexpat=2.7.1=hecca717_0
- libffi=3.4.6=h2dba641_1
- libfreetype=2.14.0=ha770c72_1
- libfreetype6=2.14.0=h73754d4_1
- libfreetype=2.14.1=ha770c72_0
- libfreetype6=2.14.1=h73754d4_0
- libgcc=15.1.0=h767d61c_5
- libgcc-ng=15.1.0=h69a702a_5
- libgfortran=15.1.0=h69a702a_5
Expand All @@ -151,8 +151,8 @@ dependencies:
- libwebp-base=1.6.0=hd42ef1d_0
- libxcb=1.17.0=h8a09558_0
- libxcrypt=4.4.36=hd590300_1
- libxml2=2.14.6=h26afc86_1
- libxml2-16=2.14.6=ha9997c6_1
- libxml2=2.15.0=h26afc86_0
- libxml2-16=2.15.0=ha9997c6_0
- libzlib=1.3.1=hb9d3cd8_2
- linkify-it-py=2.0.3=pyhd8ed1ab_1
- llvm-openmp=21.1.0=h4922eb0_0
Expand Down Expand Up @@ -185,7 +185,7 @@ dependencies:
- numcodecs=0.15.1=py311h7db5c69_0
- numpy=1.26.4=py311h64a7726_0
- openjpeg=2.5.3=h55fea9a_1
- openssl=3.5.2=h26f9b46_0
- openssl=3.5.3=h26f9b46_0
- overrides=7.7.0=pyhd8ed1ab_1
- packaging=25.0=pyh29332c3_1
- pandas=2.3.2=py311hed34c8f_0
Expand All @@ -208,14 +208,14 @@ dependencies:
- pybtex=0.25.1=pyhd8ed1ab_0
- pybtex-docutils=1.0.3=py311h38be061_2
- pycparser=2.22=pyh29332c3_1
- pydantic=2.11.7=pyh3cfb1c2_0
- pydantic=2.11.9=pyh3cfb1c2_0
- pydantic-core=2.33.2=py311hdae7d1d_0
- pydata-sphinx-theme=0.15.4=pyhd8ed1ab_0
- pydiso=0.1.2=py311h19ea254_0
- pygments=2.19.2=pyhd8ed1ab_0
- pylint=3.3.8=pyhe01879c_0
- pymatsolver=0.3.1=pyh48887ae_201
- pyparsing=3.2.3=pyhe01879c_2
- pyparsing=3.2.4=pyhcf101f3_0
- pysocks=1.7.1=pyha55dd90_7
- pytest=8.4.2=pyhd8ed1ab_0
- pytest-cov=7.0.0=pyhcf101f3_1
Expand Down Expand Up @@ -305,11 +305,11 @@ dependencies:
- zeromq=4.3.5=h387f397_9
- zict=3.0.0=pyhd8ed1ab_1
- zipp=3.23.0=pyhd8ed1ab_0
- zstandard=0.24.0=py311h4854a17_1
- zstandard=0.25.0=py311haee01d2_0
- zstd=1.5.7=hb8e6e7a_2
- pip:
- geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@a6627f0a6e663e9c3f0e9874f401a34ab8990488
- geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@a05ed0984fc78d2b324c730ccd4294c0fde0f901
- geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@a91e9479d6e948728ad430e0db526c75013c9773
- geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@496248c06ecbc113df0f0b76e1afc4610c469bf5
- grid-apps @ git+https://github.com/MiraGeoscience/grid-apps.git@416815352706add295a9d2b90814d2291068a85e
- mira-simpeg @ git+https://github.com/MiraGeoscience/simpeg.git@7da0cb45b4ff1213d1cca120773971aa8468a5c1

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