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feat(app-panel): improve Code Ocean parameters & categories#3

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kelly-sovacool merged 10 commits into
mainfrom
paramOpt
Jun 30, 2026
Merged

feat(app-panel): improve Code Ocean parameters & categories#3
kelly-sovacool merged 10 commits into
mainfrom
paramOpt

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@phoman14

@phoman14 phoman14 commented Jun 30, 2026

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Changes

Summary: split visualization controls into General, PCA, Histogram, and Heatmap categories; moved Advanced to the final category; kept chart icons for visualization categories. Parameter type changes: converted count_type, norm_type, input_in_log_counts, voom_normalization_method, add_label_to_pca, legend_position_for_pca, color_histogram_by_group, set_min_max_for_x_axis_for_histogram, legend_position_for_histogram, plot_corr_matrix_heatmap, and interactive_plots from free-text fields to list controls with explicit allowed choices. Validation: app-panel JSON/category checks passed and capsule tests passed.

PR Checklist

(Strikethrough any points that are not applicable.)

  • This comment contains a description of changes with justifications, with any relevant issues linked.
  • Run the capsule in Code Ocean and ensure it completes successfully with no errors.
  • Update CHANGELOG.md with a short description of any user-facing changes and reference the PR number. Follow the style described in https://style.tidyverse.org/news.html
  • The tests workflow succeeds on the latest commit.

@phoman14 phoman14 requested a review from kelly-sovacool June 30, 2026 04:40
@kelly-sovacool kelly-sovacool changed the title Update Code Ocean parameter categories feat(app-panel): improve Code Ocean parameters & categories Jun 30, 2026

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looks good and I confirmed the reproducible run succeeds in CO

@kelly-sovacool kelly-sovacool merged commit 45b167b into main Jun 30, 2026
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@kelly-sovacool kelly-sovacool deleted the paramOpt branch June 30, 2026 15:11
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2 participants