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Merged
kelly-sovacool merged 3 commits into from
Jul 1, 2026
Merged

feat(app-panel): improve parameter UI #2

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459e1a7
Convert volcano summary booleans to lists
phoman14 Jun 30, 2026
b55420a
Update changelog for parameter UI changes
phoman14 Jun 30, 2026
da16526
Add author handle to changelog entry
phoman14 Jun 30, 2026
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56 changes: 42 additions & 14 deletions .codeocean/app-panel.json
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Original file line number Diff line number Diff line change
Expand Up @@ -102,19 +102,27 @@
"name": "Add custom features to labels",
"param_name": "add_features",
"description": "Add custom_gene_list to default labels",
"type": "text",
"type": "list",
"value_type": "string",
"default_value": "FALSE"
"default_value": "FALSE",
"extra_data": [
"TRUE",
"FALSE"
]
},
{
"id": "label_features_id",
"category": "FvI4Z2eb9sjL47Jt",
"name": "Label only custom features",
"param_name": "label_features",
"description": "Label ONLY features from custom_gene_list",
"type": "text",
"type": "list",
"value_type": "string",
"default_value": "FALSE"
"default_value": "FALSE",
"extra_data": [
"TRUE",
"FALSE"
]
},
{
"id": "custom_gene_list_id",
Expand Down Expand Up @@ -201,9 +209,13 @@
"name": "Displace specific labels",
"param_name": "displace_feature_labels",
"description": "Displace specific feature labels",
"type": "text",
"type": "list",
"value_type": "string",
"default_value": "FALSE"
"default_value": "FALSE",
"extra_data": [
"TRUE",
"FALSE"
]
},
{
"id": "custom_gene_list_special_label_displacement_id",
Expand Down Expand Up @@ -290,19 +302,27 @@
"name": "Flip volcano plot",
"param_name": "flip_vplot",
"description": "Flip fold change values",
"type": "text",
"type": "list",
"value_type": "string",
"default_value": "FALSE"
"default_value": "FALSE",
"extra_data": [
"TRUE",
"FALSE"
]
},
{
"id": "use_default_x_axis_limit_id",
"category": "PlotStyling",
"name": "Use default X-axis limit",
"param_name": "use_default_x_axis_limit",
"description": "Use default X-axis limit",
"type": "text",
"type": "list",
"value_type": "string",
"default_value": "TRUE"
"default_value": "TRUE",
"extra_data": [
"TRUE",
"FALSE"
]
},
{
"id": "x_axis_limit_id",
Expand All @@ -320,9 +340,13 @@
"name": "Use default Y-axis limit",
"param_name": "use_default_y_axis_limit",
"description": "Use default Y-axis limit",
"type": "text",
"type": "list",
"value_type": "string",
"default_value": "TRUE"
"default_value": "TRUE",
"extra_data": [
"TRUE",
"FALSE"
]
},
{
"id": "y_axis_limit_id",
Expand Down Expand Up @@ -390,9 +414,13 @@
"name": "Use default grid layout",
"param_name": "use_default_grid_layout",
"description": "Use default grid layout for multiple plots",
"type": "text",
"type": "list",
"value_type": "string",
"default_value": "TRUE"
"default_value": "TRUE",
"extra_data": [
"TRUE",
"FALSE"
]
},
{
"id": "number_of_rows_in_grid_layout_id",
Expand Down
6 changes: 5 additions & 1 deletion CHANGELOG.md
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Original file line number Diff line number Diff line change
@@ -1,5 +1,9 @@
# Code Ocean capsule - MOSuite - Plot Volcano Summary

## Development version

- Improved the Code Ocean parameter UI for the plot volcano summary capsule (#2, @phoman14).

## v4.0

- The MOSuite package is now available in `code/MOSuite`. (#1)
Expand All @@ -20,4 +24,4 @@ Save summarized dataframe to `results/moo/volcano_summary_data.csv`.

Initial release

<https://poc-nci.codeocean.io/capsule/6849617/tree/v1> `0a5bebc`
<https://poc-nci.codeocean.io/capsule/6849617/tree/v1> `0a5bebc`
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