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Create workdir.py for directory structure setup #895#901

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kiihne-noaa wants to merge 2 commits into
NOAA-GFDL:mainfrom
kiihne-noaa:fre-run-setup-dirs-#895
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Create workdir.py for directory structure setup #895#901
kiihne-noaa wants to merge 2 commits into
NOAA-GFDL:mainfrom
kiihne-noaa:fre-run-setup-dirs-#895

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@kiihne-noaa
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Add initial setup for working directory structure

Describe your changes

creating a workdir.py as part of frerun redevelopment

Issue ticket number and link (if applicable)

Fixes #895

Checklist before requesting a review

  • I ran my code
  • I tried to make my code readable
  • I tried to comment my code
  • I wrote a new test, if applicable
  • I wrote new instructions/documentation, if applicable
  • I ran pytest and inspected it's output
  • I ran pylint and attempted to implement some of it's feedback
  • No print statements; all user-facing info uses logging module

Add initial setup for working directory structure
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codecov Bot commented May 29, 2026

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 84.36%. Comparing base (ea3f744) to head (697f58a).
⚠️ Report is 34 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #901      +/-   ##
==========================================
+ Coverage   84.35%   84.36%   +0.01%     
==========================================
  Files          71       71              
  Lines        4997     5003       +6     
==========================================
+ Hits         4215     4221       +6     
  Misses        782      782              
Flag Coverage Δ
unittests 84.36% <ø> (+0.01%) ⬆️

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Add functionality to clean working directory while preserving temporary output directory.
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fre run: input-stager (setup-workdir)

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