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rules
Alena Schroeder edited this page Oct 7, 2025
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1 revision
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rules/: This folder is created by Snakemake and is a dedicated directory for rule definitions relating to your workflow.-
annotate_phylogeny.smk: A Snakemake file that creates additional annotations for the phylogenetic tree. -
construct_phylogeny.smk: A Snakemake file that constructs the phylogenetic tree. -
export.smk: A Snakemake file that collects the phylogenetic tree and annotations to export a Nextstrain dataset. -
prepare_sequences.smk: A Snakemake file that prepares sequences for constructing the phylogenetic tree.
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