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Pin numpy < 2 to fix PyInstaller bundling #1065

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bendichter wants to merge 2 commits into from
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Pin numpy < 2 to fix PyInstaller bundling #1065

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2994e43
Pin numpy < 2 to fix PyInstaller bundling
bendichter Mar 4, 2026
f313698
Also pin numpy < 2 in pip section for MAC-apple-silicon
bendichter Mar 4, 2026
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1 change: 1 addition & 0 deletions environments/environment-Linux.yml
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Expand Up @@ -22,4 +22,5 @@ dependencies:
- ndx-pose == 0.2.2
- nwbinspector == 0.6.5
- tables
- numpy < 2 # numpy 2.x breaks PyInstaller 6.7.0 bundling (missing numpy._core._exceptions)
- numcodecs == 0.15.1 # numcodecs 0.16.0 is not compatible with zarr 2.18.5
3 changes: 2 additions & 1 deletion environments/environment-MAC-apple-silicon.yml
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Expand Up @@ -8,7 +8,7 @@ dependencies:
# Install these from conda-forge so that dependent packages get included in the distributable
- lxml = 4.9.3 # PyPI build fails due to x64/arm64 mismatch so install from conda-forge
- pyedflib = 0.1.38 # PyPI build fails due to x64/arm64 mismatch so install from conda-forge
- numpy # May have x64/arm64 mismatch issues so install from conda-forge
- numpy < 2 # May have x64/arm64 mismatch issues so install from conda-forge; < 2 for PyInstaller compat
- pytables = 3.10.2 # PyPI build fails on arm64 so install from conda-forge (used by neuroconv deps)
- jsonschema = 4.18.0 # Also installs jsonschema-specifications
- pip
Expand All @@ -30,4 +30,5 @@ dependencies:
- tzlocal == 5.3.1 # Frontend timezone handling
- ndx-pose == 0.2.2
- nwbinspector == 0.6.5
- numpy < 2 # numpy 2.x breaks PyInstaller 6.7.0 bundling (pin in pip too, since pip can override conda)
- numcodecs == 0.15.1 # numcodecs 0.16.0 is not compatible with zarr 2.18.5
1 change: 1 addition & 0 deletions environments/environment-MAC-intel.yml
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Expand Up @@ -23,6 +23,7 @@ dependencies:
- tzlocal == 5.3.1 # Frontend timezone handling
- ndx-pose == 0.2.2
- nwbinspector == 0.6.5
- numpy < 2 # numpy 2.x breaks PyInstaller 6.7.0 bundling (missing numpy._core._exceptions)
- numcodecs == 0.15.1 # numcodecs 0.16.0 is not compatible with zarr 2.18.5
- h5py == 3.12.1 # 3.13.0 uses features in hdf5 1.14.4 that is not available in earlier hdf5 libs packaged
# with tables==3.9.1 (latest that can be used by neuroconv 0.6.0).
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1 change: 1 addition & 0 deletions environments/environment-Windows.yml
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Expand Up @@ -25,4 +25,5 @@ dependencies:
- ndx-pose == 0.2.2
- nwbinspector == 0.6.5
- tables
- numpy < 2 # numpy 2.x breaks PyInstaller 6.7.0 bundling (missing numpy._core._exceptions)
- numcodecs == 0.15.1 # numcodecs 0.16.0 is not compatible with zarr 2.18.5
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