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fix bug in creating covariatesContinuous
Merge branch 'main' into develop # Conflicts: # DESCRIPTION # NEWS.md # docs/404.html # docs/articles/CreatingCovariatesBasedOnOtherCohorts.html # docs/articles/CreatingCovariatesUsingCohortAttributes.html # docs/articles/CreatingCustomCovariateBuilders.html # docs/articles/CreatingCustomCovariateBuildersKorean.html # docs/articles/UsingFeatureExtraction.html # docs/articles/UsingFeatureExtractionKorean.html # docs/articles/index.html # docs/authors.html # docs/index.html # docs/news/index.html # docs/pkgdown.yml # docs/reference/CovariateData-class.html # docs/reference/FeatureExtraction-package.html # docs/reference/aggregateCovariates.html # docs/reference/computeStandardizedDifference.html # docs/reference/convertPrespecSettingsToDetailedSettings.html # docs/reference/createAnalysisDetails.html # docs/reference/createCohortAttrCovariateSettings.html # docs/reference/createCohortBasedCovariateSettings.html # docs/reference/createCohortBasedTemporalCovariateSettings.html # docs/reference/createCovariateSettings.html # docs/reference/createDefaultCovariateSettings.html # docs/reference/createDefaultTemporalCovariateSettings.html # docs/reference/createDetailedCovariateSettings.html # docs/reference/createDetailedTemporalCovariateSettings.html # docs/reference/createEmptyCovariateData.html # docs/reference/createTable1.html # docs/reference/createTable1CovariateSettings.html # docs/reference/createTemporalCovariateSettings.html # docs/reference/createTemporalSequenceCovariateSettings.html # docs/reference/dot-createLooCovariateSettings.html # docs/reference/dot-getDbLooCovariateData.html # docs/reference/filterByCohortDefinitionId.html # docs/reference/filterByRowId.html # docs/reference/getDbCohortAttrCovariatesData.html # docs/reference/getDbCohortBasedCovariatesData.html # docs/reference/getDbCovariateData.html # docs/reference/getDbDefaultCovariateData.html # docs/reference/getDefaultTable1Specifications.html # docs/reference/index.html # docs/reference/isAggregatedCovariateData.html # docs/reference/isCovariateData.html # docs/reference/isTemporalCovariateData.html # docs/reference/loadCovariateData.html # docs/reference/replaceCovariateSettingsCohortSchemaTable.html # docs/reference/saveCovariateData.html # docs/reference/tidyCovariateData.html # extras/FeatureExtraction.pdf # inst/doc/CreatingCovariatesBasedOnOtherCohorts.pdf # inst/doc/CreatingCovariatesUsingCohortAttributes.pdf # inst/doc/CreatingCustomCovariateBuilders.pdf # inst/doc/CreatingCustomCovariateBuildersKorean.pdf # inst/doc/UsingFeatureExtraction.pdf # inst/doc/UsingFeatureExtractionKorean.pdf # inst/java/featureExtraction-3.10.0.jar # inst/java/featureExtraction-3.11.0.jar # inst/java/featureExtraction-3.12.0.jar
* Made commented sqlite test for old code work * Changes to interface of getDefaultCovariates * Fixes, restoration of old parameters and adaptation to use temp tables * Creating/dropping or appending results checked. Added details to news * whitespace * Fix merge problems * Remove debugging message * Restore warning for post-coordinated concept collision * fixing export FE to database - letting users export to a set of database tables instead of downloading to Andromeda * Update CreateExportTables.sql fixing time_ref columns * changing temp table insert * Update GetDefaultCovariates.R * Update DemographicsTime.sql explicitly specifying where the observation_period_ columns come from just in case the cohort table has these are columns * Update DemographicsTime.sql missed period_id * Update GetDefaultCovariates.R fixing oracleTempSchema being used * Update roxygen2 comments, unit tests and fix errors (#322) * Updates to remove unnecessary tests, add back collision detection and to properly pass off parameters to covariate builder functions * Update docs * Fix parameter documentation and example * Bump version and date in description and update news.md --------- Co-authored-by: Anthony Sena <asena5@its.jnj.com> Co-authored-by: jreps <jreps@its.jnj.com> Co-authored-by: Anthony Sena <anthonysena@users.noreply.github.com>
* Run styler * Update copyright year * Regenerate manual * Regenerate vignettes * Update pkgdown docs
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