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Correct mitochondrial gene identification. #20

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Correct mitochondrial gene identification. #20

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5974045
Correct mitochondrial gene identification.
maxim-h Nov 19, 2025
c7ae896
Switch to gene names
maxim-h Nov 23, 2025
e2b112d
Use sapply to handle both object types
maxim-h Nov 24, 2025
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2 changes: 1 addition & 1 deletion inst/book/quality-control.Rmd
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Expand Up @@ -72,7 +72,7 @@ Finally, the `altexps_ERCC_percent` column contains the percentage of reads mapp
library(SingleCellExperiment)
# Identifying the mitochondrial transcripts in our SingleCellExperiment.
location <- rowRanges(sce.416b)
is.mito <- any(seqnames(location)=="MT")
is.mito <- sapply(seqnames(location)=="MT", any)

library(scuttle)
df <- perCellQCMetrics(sce.416b, subsets=list(Mito=is.mito))
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