implement the med xpert qa text scenario in the medhelm#19
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chakravarthik27 wants to merge 8 commits into
Open
implement the med xpert qa text scenario in the medhelm#19chakravarthik27 wants to merge 8 commits into
chakravarthik27 wants to merge 8 commits into
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iulianigas
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May 20, 2026
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- Re-pin numba and together in requirements.txt (don't leave them fully unpinned).
- Clarify whether tiktoken should be core vs. optional.
- Fix the citation and description mismatch in schema_medhelm.yaml
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This pull request introduces the MedXpertQA Text benchmark to the codebase, enabling the evaluation of medical question answering capabilities in large language models. It includes the implementation of the scenario, integration into run specifications, and updates to the configuration and dependencies to support the new benchmark. The most important changes are summarized below:
New Scenario Implementation:
MedXpertQATextScenarioclass inmedxpert_qa_text_scenario.py, which loads and processes the MedXpertQA Text dataset from HuggingFace, structures instances for evaluation, and provides scenario metadata.Integration with Benchmarking Framework:
Registered a new run specification function
get_medxpert_qa_text_spec()inmedhelm_run_specs.pyto define how the scenario should be run, including adapter and metric specs.Updated
schema_medhelm.yamlto addmedxpert_qa_textto the list of run groups and provided its display name, description, metric groups, environment, and taxonomy information for the benchmark schema.Dependency and Build Updates:
Relaxed and aligned version constraints for several dependencies in
pyproject.toml, such asdatasets,numba, andtogether, and addedtiktokenas a new dependency to support the new scenario.Pinned the
setuptoolsversion below 82 foropenai-whisperextra build dependencies to avoid build issues.