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Update README with new metrics for slidename.json #21

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Update README with new metrics for slidename.json #21

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38 changes: 37 additions & 1 deletion README.md
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Expand Up @@ -112,7 +112,43 @@ The code creates two folders in the mounted output directory:
- *slidename*_RoiLocs.csv - ROI coordinates and scores
- *slidename*_RoiLocs.png - visualization of ROI locations
- *slidename*.json - aggregated features of the whole slide
- *slidename*.tif - combined segmentation mask <br>MuTILsMaskVisualizer.py can be used to convert it to a color-coded image
- *slidename*.tif - combined segmentation mask (MuTILsMaskVisualizer.py can be used to convert it to a color-coded image)
- <i>slidename.json</i> - has the following aggregated metrics:
- n_rois:
- n_salient_rois:
- Mean_SaliencyScore:
- Mean_TissueRatio:
- Mean_TILs2AnyStromaRatio:
- Mean_TILs2AllRatio:
- Mean_TILs2TumorRatio:
- Mean_SalientTILs2StromaRatio:
- Mean_nTILsCells2AnyStromaRegionArea:
- Mean_nTILsCells2nStromaCells:
- Mean_nTILsCells2nAllStromaCells:
- Mean_nTILsCells2nAllCells:
- Mean_nTILsCells2nTumorCells:
- Std_SaliencyScore:
- Std_TissueRatio:
- Std_TILs2AnyStromaRatio:
- Std_TILs2AllRatio:
- Std_TILs2TumorRatio:
- Std_SalientTILs2StromaRatio:
- Std_nTILsCells2AnyStromaRegionArea:
- Std_nTILsCells2nStromaCells:
- Std_nTILsCells2nAllStromaCells:
- Std_nTILsCells2nAllCells:
- Std_nTILsCells2nTumorCells:
- SaliencyScore:
- TissueRatio:
- TILs2AnyStromaRatio:
- TILs2AllRatio:
- TILs2TumorRatio:
- SalientTILs2StromaRatio:
- nTILsCells2AnyStromaRegionArea:
- nTILsCells2nStromaCells:
- nTILsCells2nAllStromaCells:
- nTILsCells2nAllCells:
- nTILsCells2nTumorCells:


### Model weights
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