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Duplicate column name BioAssay Id=1577370 Name=C2A_neg - caudal ganglionic eminence derived GABAergic cortical interneuron

Status: Open.

Bug

#1630 In PavlidisLab/Gemma;

· arteymix opened on Feb 27, 2026

Exception during index Merge operation

high priorityIssues that require immediate attentionIssues that require immediate attention

Status: Open.

Bug

#1629 In PavlidisLab/Gemma;

· arteymix opened on Feb 27, 2026

Failed to initialize Mammalian Phenotype Ontology

Status: Open.

Bug

#1628 In PavlidisLab/Gemma;

· arteymix opened on Feb 27, 2026

·  

1.32.7

The maven-site-plugin does not change permissions on the correct directory upon deploying

low priority

mavenIssues related to MavenIssues related to Maven

workaroudIndicate that a workaround exists or is in effectIndicate that a workaround exists or is in effect

Status: Open.

Bug

#1624 In PavlidisLab/Gemma;

· arteymix opened on Feb 20, 2026

Text in platforms and expression profiles does not wrap in small viewports

guiIssues or pull requests involving the Web UIIssues or pull requests involving the Web UI

Status: Open.

Bug

#1623 In PavlidisLab/Gemma;

· arteymix opened on Feb 20, 2026

Allow performing DEA on a subset of the samples

enhancementEnhance the code or user experienceEnhance the code or user experience

Status: Open.

Feature

#1622 In PavlidisLab/Gemma;

· arteymix opened on Feb 20, 2026

·  

1.32.7

java.util.NoSuchElementException when post-processing GSE221856.1

high priorityIssues that require immediate attentionIssues that require immediate attention

Status: Open.

Bug

#1620 In PavlidisLab/Gemma;

· cyan864 opened on Feb 19, 2026

·  

1.32.7

Handle better experiments lacking a design or make it non-null

databaseIssues that involve the databaseIssues that involve the database

enhancementEnhance the code or user experienceEnhance the code or user experience

low priority

Status: Open.

Feature

#1618 In PavlidisLab/Gemma;

· arteymix opened on Feb 17, 2026

·  

1.32.7

ClientAbortException are not suppressed in error logs for the REST API

rest-apiIssues or pull requests involving the RESTful APIIssues or pull requests involving the RESTful API

Status: Open.

Bug

#1616 In PavlidisLab/Gemma;

· arteymix opened on Feb 15, 2026

·  

1.32.7

Provide prefix-aware completions for the CLI

cliIssues affecting the CLIIssues affecting the CLI

enhancementEnhance the code or user experienceEnhance the code or user experience

Status: Open.

Feature

#1615 In PavlidisLab/Gemma;

· arteymix opened on Feb 15, 2026

Add a completion endpoint to the REST API

rest-apiIssues or pull requests involving the RESTful APIIssues or pull requests involving the RESTful API

Status: Open.

Feature

#1611 In PavlidisLab/Gemma;

· arteymix opened on Feb 10, 2026

Find ontology term by OBO IDs

enhancementEnhance the code or user experienceEnhance the code or user experience

Status: Open.

#1610 In PavlidisLab/Gemma;

· arteymix opened on Feb 10, 2026