Basic Gene Renaming R script to help rename from ENSEMBL gene names to other nomenclatures.
Type in your directories into the R script, have the correct libraries installed, and run the script.
Typically following featureCounts, a directory may look like this:
01.txt
02.txt
03.txt
Where each of these txt files contain a featureCounts output for that specific sample/barcoded sample. GeneRenaming groups the text file information into a coherent counts table. Make sure these are the only txt files in the directory. You have the freedom to easily rename the columns at the end of the script.
dplyr_1.0.4
biomaRt_2.42.1
R version 3.6.1 (2019-07-05)
Platform: x86_64-conda_cos6-linux-gnu (64-bit)
Running under: Ubuntu 20.04.1 LTS