SIPMeta correction of subtraction function

Corrected the bug of the 28 august 20202 "the subtraction function is broken. When doing the subtraction I got this message: “Error! This is usually because the chromosome names don't match up between the loops file and the raw data files. For example Chr1 (capitalized) vs chr1 (no caps) vs 1 (no chr).”

SIPMeta with mcool files

mcool option (Quick Start)
Correction the same issue than issue #5 from SIP.
manage the different cooltools versions
GUI correction and readme correction

Chr size managing

Chr size management

SIPMeta v 1.2.4

catch juicertools box error

SIPMeta v 1.2.4

Correction of read.me and command line help

Correction of spelling pb

line 176 in mainMetaplot.java

Empty line allowed in the loops file

SIPMeta_1.2.2

allow empty line in the loops file

Correction of prefix problem

SIPMeta_1.2.1

Correct the prefix stuf

txt file problem solve

problem is that if the loops file doesn’t end in .txt SIPMeta alters the original file.

1. Don’t require .txt in the file name
2. Don’t alter the original loops file no matter what

Speeling corrected and expection added

exception added if the chr are not well name,
spelling correction.
bullseye corrected: handle user input floats for the color scale