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CALIBRATION_STUDY
CALIBRATION_STUDY
 
 
DATA_SETUP
DATA_SETUP
 
 
PREPROCESSING
PREPROCESSING
 
 
QUALITY_CONTROL
QUALITY_CONTROL
 
 
.gitattributes
.gitattributes
 
 
.gitignore
.gitignore
 
 
CTMT_figures.py
CTMT_figures.py
 
 
CTMT_figures_20151116.py
CTMT_figures_20151116.py
 
 
CTMT_table.py
CTMT_table.py
 
 
CTMT_table_new.py
CTMT_table_new.py
 
 
CT_analysis_wrapper.py
CT_analysis_wrapper.py
 
 
Export_data.py
Export_data.py
 
 
Extract_ParcROIs.sh
Extract_ParcROIs.sh
 
 
LobesStrictLUT.txt
LobesStrictLUT.txt
 
 
NSPN_functions.py
NSPN_functions.py
 
 
NetworkMeasuresCTMTetc.m
NetworkMeasuresCTMTetc.m
 
 
Notes.txt
Notes.txt
 
 
Parcellation_PostEdits.sh
Parcellation_PostEdits.sh
 
 
README.md
README.md
 
 
annotate_images_to_movie.py
annotate_images_to_movie.py
 
 
connectivity_extract.py
connectivity_extract.py
 
 
connectivity_loop.m
connectivity_loop.m
 
 
create_data_dictionary.py
create_data_dictionary.py
 
 
create_data_dictionary_20151114.py
create_data_dictionary_20151114.py
 
 
demographics_table.py
demographics_table.py
 
 
destrieux_labels_order.txt
destrieux_labels_order.txt
 
 
fill_measure_dict.py
fill_measure_dict.py
 
 
freesurfer_combine_CT_stats.sh
freesurfer_combine_CT_stats.sh
 
 
freesurfer_combine_rois_stats.sh
freesurfer_combine_rois_stats.sh
 
 
freesurfer_extract_CT.sh
freesurfer_extract_CT.sh
 
 
freesurfer_extract_dti_rois.sh
freesurfer_extract_dti_rois.sh
 
 
freesurfer_extract_rois.sh
freesurfer_extract_rois.sh
 
 
freesurfer_lobes.sh
freesurfer_lobes.sh
 
 
freesurfer_probtrackx.sh
freesurfer_probtrackx.sh
 
 
freesurfer_project_dti.sh
freesurfer_project_dti.sh
 
 
freesurfer_project_to_surface.sh
freesurfer_project_to_surface.sh
 
 
freesurfer_rois_behavmerge.py
freesurfer_rois_behavmerge.py
 
 
freesurfer_vertex_analysis.sh
freesurfer_vertex_analysis.sh
 
 
freesurfer_vertex_analysis_multipleSmoothing.sh
freesurfer_vertex_analysis_multipleSmoothing.sh
 
 
interim_analysis_extract_freesurfer.py
interim_analysis_extract_freesurfer.py
 
 
interim_analysis_extract_freesurfer_lobes.py
interim_analysis_extract_freesurfer_lobes.py
 
 
lalaland.sh
lalaland.sh
 
 
making_synthetic_data.py
making_synthetic_data.py
 
 
mapping_parcellation_to_lobes.py
mapping_parcellation_to_lobes.py
 
 
networkx_functions.py
networkx_functions.py
 
 
parc500LUT.txt
parc500LUT.txt
 
 
permutation_stats.py
permutation_stats.py
 
 
probtrackx_create_connectivity_matrix.py
probtrackx_create_connectivity_matrix.py
 
 
pysurfer_plot_surface_values_combineMeasures.py
pysurfer_plot_surface_values_combineMeasures.py
 
 
pysurfer_plot_surface_values_csvfile.py
pysurfer_plot_surface_values_csvfile.py
 
 
regional_correlation_functions.py
regional_correlation_functions.py
 
 
replication_tables.py
replication_tables.py
 
 
setup_connectivity_files.sh
setup_connectivity_files.sh
 
 
stats_functions.py
stats_functions.py
 
 
values_in_manuscript.py
values_in_manuscript.py
 
 
violin_plots_MTdiffdepths.py
violin_plots_MTdiffdepths.py
 
 

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NSPN_CODE

Code written for the NSPN project By Kirstie Whitaker Contact information: kw401@cam.ac.uk

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Code written for the NSPN project

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