GitHub - RebekahWang781/PBC_example: This is an example to simulate 6 monomers in periodic boundary condition

Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
__pycache__		__pycache__
cleaned_pdbs		cleaned_pdbs
original_pdbs		original_pdbs
water		water
N17_6-cleaned.pdb		N17_6-cleaned.pdb
N17_6-openmmawsem.pdb		N17_6-openmmawsem.pdb
N17_6.fasta		N17_6.fasta
N17_6.pdb		N17_6.pdb
N17_6_A.gro		N17_6_A.gro
N17_6_B.gro		N17_6_B.gro
N17_6_C.gro		N17_6_C.gro
N17_6_D.gro		N17_6_D.gro
N17_6_E.gro		N17_6_E.gro
N17_6_F.gro		N17_6_F.gro
analysis_commandline_args.txt		analysis_commandline_args.txt
anti_HB		anti_HB
anti_NHB		anti_NHB
anti_one		anti_one
burial_gamma.dat		burial_gamma.dat
cbs.data		cbs.data
charge.txt		charge.txt
commandline_args.txt		commandline_args.txt
crystal_structure-cleaned.pdb		crystal_structure-cleaned.pdb
crystal_structure-openmmawsem.pdb		crystal_structure-openmmawsem.pdb
crystal_structure.fasta		crystal_structure.fasta
crystal_structure.pdb		crystal_structure.pdb
forces_setup_pbc.py		forces_setup_pbc.py
gamma.dat		gamma.dat
membrane_gamma.dat		membrane_gamma.dat
mm_analyze_PBC_dh.py		mm_analyze_PBC_dh.py
mm_run_pbc.py		mm_run_pbc.py
para_HB		para_HB
para_one		para_one
rep_commands_1.sh~		rep_commands_1.sh~
single_frags.mem		single_frags.mem
ssweight		ssweight
ssweight.stride		ssweight.stride
zim		zim
zimPosition		zimPosition