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16 changes: 8 additions & 8 deletions R/CheckBias.R
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Original file line number Diff line number Diff line change
@@ -1,15 +1,15 @@
#' Cbs
#'
#' Cbs is to check possible bias factor using the method in goseq
#' Cbs is to check possible bias factor using the method in goseq#### May you add the method/function name? somebody may want to check the details of the method
#'
#' @param re.gene.based Gene based table
#' @param re.gene.based Gene based table #### what the meaning of gene based table?
#' @param ad The possible bias factor
#' @param sub_feature The possible bias factor
#' @param threshold threshold used
#' @param genomeID which genome
#' @param geneID which type of gene ID
#' @param gene_model Gene model
#' @param method which method
#' @param threshold threshold used #### The P-value threshold to remove all items above that
#' @param genomeID which genome #### the input genome? or the the reference genome such as hg19 or mm10?
#' @param geneID which type of gene ID #### litteral geneID or the type of gene ID
#' @param gene_model Gene model #### gene model for what? / do you have the default one (details needed)?
#' @param method which method #### the method for what???
#'
#' @return A data frame that includes gene ID, status of differential gene
#' and probability weight function
Expand Down Expand Up @@ -80,4 +80,4 @@ Cbs <- function(re.gene.based, ad = "GL", sub_feature = NULL,

return(pwf.DE_interest)

}
}