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ZG-comments-Run_get_results_from_JunctionSeq.R #5

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6 changes: 3 additions & 3 deletions R/Run_get_results_from_JunctionSeq.R
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Original file line number Diff line number Diff line change
@@ -1,9 +1,9 @@
#' GetResultsFromJunctionSeq
#' Get analysis results using JunctionSeq
#' Get analysis results using JunctionSeq #### I guess we could add a brief introduction of the results, e.g. peak results, mappting results etc
#'
#' @param dir.name path name for sample information file
#' @param file.sample sample information file
#' @param file.count count file
#' @param file.count count file #### short reads count? or other count?
#' @param file.gff annotation file
#'
#' @return return an analysis results from JunctionSeq
Expand Down Expand Up @@ -49,4 +49,4 @@ GetResultsFromJunctionSeq <- function(dir.name, file.sample,
debug.mode = TRUE, use.multigene.aggregates = TRUE)

return(jscs.2)
}
}