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ZG-comments-Run_pathwaysplice.R #6

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18 changes: 9 additions & 9 deletions R/Run_pathwaysplice.R
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Original file line number Diff line number Diff line change
@@ -1,18 +1,18 @@
#' Run_pathwaysplice
#'
#' Perform pathwaysplice in one step
#' Perform pathwaysplice in one step #### pathwaysplice
#'
#' @param re.gene.based gene based results
#' @param re.gene.based gene based results #### may you add details of the gene based results?
#' @param adjust bias factor to be adjusted
#' @param sub_feature feature to be checked
#' @param threshold threshold to be used for adjustment
#' @param genomeID gene to be used
#' @param sub_feature feature to be checked #### details of the checking
#' @param threshold threshold to be used for adjustment #### p-value threshold
#' @param genomeID gene to be used #### I guess a mistake here, genome or gene?
#' @param geneID geneID to be used
#' @param gene_model gene model to be used
#' @param method method to be used
#' @param gene_model gene model to be used #### the meaning of gene model
#' @param method method to be used #### what's the method? statistics method, modeling method? etc
#' @param gene2cat get sets defined by users
#'
#' @return a list that has gene set enrichment analysis results
#' @return a list that has gene set enrichment analysis results #### a list with gene set enrichment analysis results
#' @export
#'
#' @examples
Expand Down Expand Up @@ -732,4 +732,4 @@ GetStaisitcs4GO<-function(GO.wall.DE_interest,mds.11.sample){

return(re3)

}
}