Skip to content

ZG-comments-enMap2.R #7

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
bioinformatics-gao wants to merge 1 commit into
base: master
Choose a base branch
from
Open

ZG-comments-enMap2.R #7

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
12 changes: 6 additions & 6 deletions R/enMap2.R
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,18 +1,18 @@
#' enrichmentMap
#'
#' enrichmentMap is used to draw network based on similarities between GOs
#' enrichmentMap is used to draw network based on similarities between GOs #### draw interaction network?
#'
#' @param GoSeqRes object returned from Run_pathwaysplice
#' @param gene.set.type whether you are interested in GO, KEGG, or other pathways
#' @param gene.set.type whether you are interested in GO, KEGG, or other pathways #### GO, KEGG, or other pathways according your interests
#' @param n maximum number of category to shown
#' @param fixed if set to FALSE, will invoke tkplot
#' @param vertex.label.font font size of vertex label
#' @param SimilarityThreshold threshold for defining similarity between GOs
#' @param ... additional parameter
#' @param SimilarityThreshold threshold for defining similarity between GOs
#' @param ... additional parameter
#' @export
#' @return A figure for visualizing enrichment network
#'
#' @author Aimin created this funciton based on enrichMap function in G Yu's DOSE R package
#' @author Aimin created this funciton based on enrichMap function in G Yu's DOSE R package # based on the DOSE R package by G Yu et al.
#'
#' @examples
#'
Expand Down Expand Up @@ -153,4 +153,4 @@ getIdx <- function(v, MIN, MAX) {
}
intervals <- seq(MIN, MAX, length.out = 100)
max(which(intervals <= v))
}
}