Add biopython

[casparvl]

No description provided.

[casparvl]

bot: build repo:software.caspar.nl-2025 instance:caspar-hpcv-bot for:arch=x86_64/amd/zen2

[hpcv-bot-casparvl]

New job on instance caspar-hpcv-bot for repository software.caspar.nl-2025
Building on: amd-zen2
Building for: x86_64/amd/zen2
Job dir: /home/casparl/HPCV_Software/bot-instance/jobs/2026.05/pr_4/23208276

date	job status	comment
May 29 07:13:47 UTC 2026	submitted	job id 23208276 will be eligible to start in about 10 seconds
May 29 07:13:54 UTC 2026	received	job awaits launch by Slurm scheduler
May 29 07:14:03 UTC 2026	running	job 23208276 is running
May 29 07:22:53 UTC 2026	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file slurm-23208276.out ✅ no message matching FATAL: ✅ no message matching ERROR: ✅ no message matching FAILED: ✅ no message matching required modules missing: ✅ found message(s) matching No missing installations ✅ found message matching .tar.* created! Artefacts eessi-2025.06-software-linux-x86_64-amd-zen2-17800393510.tar.zst size: 4 MiB (4462244 bytes) entries: 1112 modules under 2025.06/software/linux/x86_64/amd/zen2/modules/all Biopython/1.86-gfbf-2025b.lua software under 2025.06/software/linux/x86_64/amd/zen2/software Biopython/1.86-gfbf-2025b reprod directories under 2025.06/software/linux/x86_64/amd/zen2/reprod Biopython/1.86-gfbf-2025b/20260529_072217UTC other under 2025.06/software/linux/x86_64/amd/zen2 no other files in tarball
May 29 07:22:53 UTC 2026	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file slurm-23208276.out ❌ found message matching ERROR: ✅ no message matching [\s*FAILED\s*].*Ran .* test case

[casparvl]

bot:show_config

[surf-hpcv-bot]

Instance surf-hpcv-bot is configured to build on:

• Node type cpu_zen2:

  • OS: linux
  • CPU architecture: x86_64/amd/zen2
  • Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software', 'software.surf.nl-2025']

• Node type cpu_zen4:

  • OS: linux
  • CPU architecture: x86_64/amd/zen4
  • Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software', 'software.surf.nl-2025']

• Node type gpu_a100:

  • OS: linux
  • CPU architecture: x86_64/intel/icelake
  • Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software', 'software.surf.nl-2025']
  • Accelerators: nvidia/cc80

• Node type gpu_h100:

  • OS: linux
  • CPU architecture: x86_64/amd/zen4
  • Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software', 'software.surf.nl-2025']
  • Accelerators: nvidia/cc90