Search results

Extract and Process the EPS fluorescence channel from raw image data

Status: Open.

#65 In SamOliveiraLab/partaker-v2;

· DevAmby opened on May 26, 2026

Draft the PLOS Comp Bio manuscript

manuscriptPaper writing milestonePaper writing milestone

To DoNot started yetNot started yet

Status: Open.

#64 In SamOliveiraLab/partaker-v2;

· DevAmby opened on May 22, 2026

Acquire time series dataset with cell and EPS channels

dataData acquisition milestoneData acquisition milestone

In ProgressActively being worked onActively being worked on

Status: Open.

#63 In SamOliveiraLab/partaker-v2;

· DevAmby opened on May 22, 2026

Check Serra et al. supplementary data for usable images

dataData acquisition milestoneData acquisition milestone

In ProgressActively being worked onActively being worked on

Status: Open.

#62 In SamOliveiraLab/partaker-v2;

· DevAmby opened on May 22, 2026

Literature search: biofilm quantification from phase contrast

dataData acquisition milestoneData acquisition milestone

In ProgressActively being worked onActively being worked on

Status: Open.

#61 In SamOliveiraLab/partaker-v2;

· DevAmby opened on May 22, 2026

Track how all three levels co-evolve over time

correlationThree-level correlation milestoneThree-level correlation milestone

To DoNot started yetNot started yet

Status: Open.

#60 In SamOliveiraLab/partaker-v2;

· DevAmby opened on May 22, 2026

Compare edge cells vs center cells

correlationThree-level correlation milestoneThree-level correlation milestone

To DoNot started yetNot started yet

Status: Open.

#59 In SamOliveiraLab/partaker-v2;

· DevAmby opened on May 22, 2026

Correlate cell behavior with local EPS concentration

correlationThree-level correlation milestoneThree-level correlation milestone

To DoNot started yetNot started yet

Status: Open.

#58 In SamOliveiraLab/partaker-v2;

· DevAmby opened on May 22, 2026

CSV export for per-cell feature table

neighborhoodSingle cell neighborhood milestoneSingle cell neighborhood milestone

To DoNot started yetNot started yet

Status: Open.

#57 In SamOliveiraLab/partaker-v2;

· DevAmby opened on May 22, 2026

Mine BiofilmQ's 49 parameters for metric ideas

neighborhoodSingle cell neighborhood milestoneSingle cell neighborhood milestone

To DoNot started yetNot started yet

Status: Open.

#56 In SamOliveiraLab/partaker-v2;

· DevAmby opened on May 22, 2026

Build per-cell neighborhood metrics (the novel contribution)

neighborhoodSingle cell neighborhood milestoneSingle cell neighborhood milestone

To DoNot started yetNot started yet

Status: Open.

#55 In SamOliveiraLab/partaker-v2;

· DevAmby opened on May 22, 2026

Map EPS concentration over time

epsEPS analysis milestoneEPS analysis milestone

To DoNot started yetNot started yet

Status: Open.

#54 In SamOliveiraLab/partaker-v2;

· DevAmby opened on May 22, 2026