Update local dependencies, migrate to JSpecify

[alexander-yevsyukov]

This PR migrates ProtoData to latest versions of Base, Validation, CoreJava, and other internal dependencies.

Other notable changes

• config was pulled brining latest changes to buildSrc.
• Annotates were migrated to JSpecify.
• BoundedContextBuilder.add() extension from the io.spine.protodata.plugin package was deprecated in favour of one available from io.spine.server.
• Usages of (is_required) option were migrated to (choice).required.
• Console noise was reduced by tapping the output in tests where we emit warnings or errors intentionally.
• Tests and test fixture proto types that use field references in (min) and (max) options were commented out and disabled until the Validation support is addressed.
• Fixed logging output in BeforePrimaryDeclaration.

[codecov]

Codecov Report

Attention: Patch coverage is 83.33333% with 1 line in your changes missing coverage. Please review.

Project coverage is 73.85%. Comparing base (9e9db1e) to head (04de1ea).
Report is 11 commits behind head on master.

Additional details and impacted files

@@             Coverage Diff              @@
##             master     #352      +/-   ##
============================================
- Coverage     74.52%   73.85%   -0.67%     
  Complexity      613      613              
============================================
  Files           197      197              
  Lines          4294     4296       +2     
  Branches        397      397              
============================================
- Hits           3200     3173      -27     
- Misses          965      996      +31     
+ Partials        129      127       -2     

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