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1. DAF-HMM DAF-HMM Public

   HMM-based footprint caller for DAF-seq data, derived from FiberHMM (https://github.com/fiberseq/FiberHMM)

   Jupyter Notebook 3

2. fiberseq-fire fiberseq-fire Public

   Forked from fiberseq/FIRE

   A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.

   Python

3. fibertools-rs_sb fibertools-rs_sb Public

   Forked from fiberseq/fibertools-rs

   Tools for fiberseq data written in rust.

   Rust